View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4577_low_7 (Length: 314)
Name: NF4577_low_7
Description: NF4577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4577_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 36766251 - 36766523
Alignment:
| Q |
19 |
ttgtcagtcatggcgatggtttttagaaagaatggctaagagcccgtgtttactttatgaatggtgatgggatagaataagtttatgggggaggtaatgt |
118 |
Q |
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| T |
36766251 |
ttgtcagtcatggcgatggtttttagaaagaatggctaagagtccgtgtttactttatgaatggtgatgggatacaataagtttatgggggaggtaatgt |
36766350 |
T |
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| Q |
119 |
attttactggagagatctcaattcggtggctgtgctatgatcgattttctacataggtttgggggttttaagtgtctagtggcgtggtttgaattgtaat |
218 |
Q |
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| T |
36766351 |
attttactggcgagatctcaattcggtggctgtgctatgatcgattttctacataggttcgggggttttaagtgtctagtggcatggtttgaattgtaat |
36766450 |
T |
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| Q |
219 |
tgtgtactgtcatttgttttttcggctgatatggtctatgaggctctgctttttgaatttaggggtctgatatg |
292 |
Q |
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| T |
36766451 |
tgtgtacggtcatttg-tttttcggctgatatggtctatgagactctgctttttgaatttaggggtccgatatg |
36766523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 252
Target Start/End: Original strand, 36755432 - 36755586
Alignment:
| Q |
100 |
tttatgggggaggtaatgtattttactggagagatctcaattcggtggctgtgctatgatcgattttctaca-taggtttgggggttttaagtgtctagt |
198 |
Q |
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|||||| |||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| | |||| ||||||||| | |||||| | |
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| T |
36755432 |
tttatgcgggaggtaatgtattttactggcgagatctcattttggtggctgtgctatgatcgattttctacattcggttcgggggtttttactgtctact |
36755531 |
T |
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| Q |
199 |
ggcgtggtttgaattgtaat--tgtgtactgtcatttgttttttcggctgatatgg |
252 |
Q |
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| T |
36755532 |
ggtgtggtttgcattgtaattctgtgtactgtcatttg-tttttcggctgatatgg |
36755586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 36747962 - 36748087
Alignment:
| Q |
100 |
tttatgggggaggtaatgtattttactggagagatctcaattcggtggctgtgctatgatcgattttctaca-taggtttgggggttttaagtgtctagt |
198 |
Q |
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|||||| ||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| | |||| |||| |||| |||||||| | |
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| T |
36747962 |
tttatgtgggaggtaatgtattttacatgcgagatctcaattcggtggctgtgatatgatcgattttctacattcggttcggggttttttagtgtctact |
36748061 |
T |
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| Q |
199 |
ggcgtggtttgaattgtaattgtgta |
224 |
Q |
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| T |
36748062 |
ggtgtggtttgcattgtaattatgta |
36748087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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