View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4578-Insertion-1 (Length: 1052)

Name: NF4578-Insertion-1
Description: NF4578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4578-Insertion-1
NF4578-Insertion-1
[»] chr7 (1 HSPs)
chr7 (18-961)||(4563443-4564374)
[»] chr6 (1 HSPs)
chr6 (644-673)||(30688368-30688397)


Alignment Details
Target: chr7 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 18 - 961
Target Start/End: Complemental strand, 4564374 - 4563443
Alignment:
Q  18 attttgatttaatggttcatatcccacgagtttaatgacctgatttacatagaatctaaacattcatccagtacgtcactggatgttgagttgagattaa 117  Q
    |||||||||||||| ||||||| |||||||||| || ||||||||||||||||||             ||||||||| |||||||||| ||||| |||||    
T  4564374 attttgatttaatgattcatattccacgagtttgattacctgatttacatagaatg------------cagtacgtcgctggatgttgggttgaaattaa 4564287  T
Q  118 acggtctaaatttcaataaatattttaatttagaatgaaaactaaaatacccaacttaaaatataaacgatttaatcttgattcaacggtgagtgatttc 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| | |  | |||||||||||||||||| |||||||||    
T  4564286 acggtctaaatttcaataaatattttgatttagaatgaaaactaaaataccaaacttaaaatattagcagtctaatcttgattcaacggtcagtgatttc 4564187  T
Q  218 tcagcacatcaaatccatatcccatattttgacacatcccaaactccaaacatctttatctctctcttacgtaatgtaatcaaaaagtagtcaccacttc 317  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4564186 tcagcccatcaaatccatatcccatattttgacacatcccaaactccaaacatctttatctctctcttacgtaatgtaatcaaaaagtagtcaccacttc 4564087  T
Q  318 gtatattctaagcaagctatttttcaacaatcat-atat-ttaaatagtacaccacaattccttcctaacacaacacaccacaaacacactctgtcttct 415  Q
    |||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4564086 gtatattctaagcaagctatttttcaacaatcataatatatttaatagtacaccacaattccttcctaacacaacacaacacaaacacactctgtcttct 4563987  T
Q  416 ggcttatgtagcagctgcatcttcttgagatnnnnnnnnnnnnnnnnnnnnnnnnngtattcttctgttttgtatccaaacacatagaaagaaaccaaaa 515  Q
    |||||||||||||||||||||||||||||||                         |||||||||||||||||||||||||||| |||||||||||||||    
T  4563986 ggcttatgtagcagctgcatcttcttgagataaacaaaaaaacagtaaaaataaaagtattcttctgttttgtatccaaacacagagaaagaaaccaaaa 4563887  T
Q  516 acatttcttcttggttctctcaaatgaatctcttcaggtattctcttcacttttatccattctctttcttttgtctttcattctatccatcaatccgaac 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4563886 acatttcttcttggttctctcaaatgaatctcttcaggtattctcttcacttttatccattctctttcttttgtctttcattctatccatcaatccgaag 4563787  T
Q  616 acattatcttcatagttttaaatcgcgattacactgcaaacttttatattacggtaaatgtgtcatatacaaccgaaattgtagttgcataccacaattc 715  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| | ||| ||||||||||||||||||||||||||||||    
T  4563786 acattatcttcatagttttaaatcgcgattacaatgcaaacttttatattacagtaaatgtgttagatataaccgaaattgtagttgcataccacaattc 4563687  T
Q  716 aaaactatgattctcttctgttcacacggatacacaatgaannnnnnnnnngcatgatcaaaaacattatccagcaaacatattcaaattatagtgaatt 815  Q
    |||||||||||||| ||| ||||||||||||||||||||||          ||||||||  || ||||||||||||||||||||||||||||||| ||||    
T  4563686 aaaactatgattcttttccgttcacacggatacacaatgaa-tttttttttgcatgatc--aagcattatccagcaaacatattcaaattatagtcaatt 4563590  T
Q  816 tactactatggtcgaaataatcaagaagattttaaggtcatcgcatcggcatcacaattgcaatttcaaatgcataggccgcatttttcttaaatataaa 915  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  4563589 tactactatggtcgaaataatcaagaagattttaaggtcatcgcatcggcatcacaattgcaatttcaaatgcatcgg-cgcatttttcttaaatataaa 4563491  T
Q  916 gatatttagtgtgactgtagccgcgactaca--tttaaaccatgaaat 961  Q
    |||||||||||||||||||||||||||||||  || ||||||||||||    
T  4563490 gatatttagtgtgactgtagccgcgactacaatttaaaaccatgaaat 4563443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 644 - 673
Target Start/End: Original strand, 30688368 - 30688397
Alignment:
Q  644 ttacactgcaaacttttatattacggtaaa 673  Q
    ||||||||||||||||||||||||||||||    
T  30688368 ttacactgcaaacttttatattacggtaaa 30688397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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