View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4578-Insertion-10 (Length: 383)
Name: NF4578-Insertion-10
Description: NF4578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4578-Insertion-10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 379
Target Start/End: Original strand, 8167436 - 8167810
Alignment:
| Q |
8 |
gttttccctatcgagaaagtgtttaatgacggtgttagggttagggtaaccacaaacgtagagtttttcgtttggtgaagtgatgatcattgcagttttt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8167436 |
gttttccctatcgagaaagtgtttaatgacggtgttagggttagggtaaccacaaacgtagagttttccgtttggtgaagtgatgatcattgcagttttt |
8167535 |
T |
|
| Q |
108 |
gcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttcttga |
207 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
8167536 |
gcattgcataggatagatagttctgtaactttgttgaagagccctagtttgcgttttgagaaggtatcgaggggcttgtttgattgttctgctttcttga |
8167635 |
T |
|
| Q |
208 |
ttttaatggt---tctcttacgtttgttgttgctttttgttgatgtgttgtttccgtctgaagaagccattggatctttcttccaagaggagaaagaggg |
304 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8167636 |
ttttaatggttgatctcttacgtttgttgttgctttttgttgatgtgttgtttccgtttgaagaagccattggatctttcttccaagaggagaaagaggg |
8167735 |
T |
|
| Q |
305 |
aagaaagaactcaataaccaaatatgaaagaaaactttgttttgttcccaaaatatggaactgactctttctttt |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
8167736 |
aagaaagaactcaataaccaaatatgaaagaaaactttgttttggtcccaaaatatggaaccgactctttctttt |
8167810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 259
Target Start/End: Original strand, 8999198 - 8999351
Alignment:
| Q |
106 |
ttgcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttctt |
205 |
Q |
| |
|
|||||||||| | ||| |||||| ||| ||||| |||||||| |||| ||||||||||||||||| ||| ||||||| |||| |||| ||||||| |
|
|
| T |
8999198 |
ttgcattgcataaaatgaatagttatgtgactttgttgaagagtcctaatttgcgttttgagaaggtatcatccagcttgttagattcttctactttctt |
8999297 |
T |
|
| Q |
206 |
gattttaatggttctcttacgtttgttgttgctttttgttgatgtgttgtttcc |
259 |
Q |
| |
|
|||| | || |||||||| || ||| |||| ||||||| || || ||||||| |
|
|
| T |
8999298 |
aatttcattgattctcttaggtgtgtcgttgtgttttgttaatatgatgtttcc |
8999351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 50707503 - 50707789
Alignment:
| Q |
8 |
gttttccctatcgagaaagtgtttaatgacggtgttagggttagggtaaccacaaacgtagagtttttcgtttggtgaagtgatgatcattgcagttttt |
107 |
Q |
| |
|
||||||| |||||| ||||||||||||||| |||| | |||||||||| || || | | ||| |||| |||||||||||||||||||| ||| |||||| |
|
|
| T |
50707503 |
gttttccttatcgaaaaagtgtttaatgacagtgtcatggttagggtatccgcatgcatggagatttttgtttggtgaagtgatgatcagtgcggttttt |
50707602 |
T |
|
| Q |
108 |
gcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttcttga |
207 |
Q |
| |
|
|||||||| ||||| |||| |||||| ||||| |||||||| ||||||||||| ||||| |||| ||| || ||||||| ||| | | ||||||||||| |
|
|
| T |
50707603 |
gcattgcatagaatggataattctgttactttgttgaagagtcctagtttgcgctttgaaaaggtatcacgccgcttgttcgatggctttgctttcttga |
50707702 |
T |
|
| Q |
208 |
ttttaatggttctcttacgtttgttgttgctttttgttgatgtgttgtttccgtctg-aagaagccattggatctttcttccaagag |
293 |
Q |
| |
|
||| ||||||| |||| ||| |||| | | ||||||||| ||||||||||| || | |||||||||||| |||||||||||||||| |
|
|
| T |
50707703 |
tttcaatggttttcttccgtgagttgcttcgttttgttgacgtgttgtttccatccgtaagaagccattgaatctttcttccaagag |
50707789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University