View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4578-Insertion-12 (Length: 121)
Name: NF4578-Insertion-12
Description: NF4578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4578-Insertion-12 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 9e-40; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 9e-40
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 21787419 - 21787509
Alignment:
| Q |
8 |
ccttcttgagtcttgactatgagtatctcagaaataaagagtgccttttctgtgttgtgtgtttgaattgaaacatgaattttcatatttc |
98 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21787419 |
ccttcatgagtcttgactatgagtatctcagaaataaagagtgccttttctgtgttgtttgtttgaattgaaacatgaattttcatatttc |
21787509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 21746581 - 21746697
Alignment:
| Q |
8 |
ccttcttgagtcttgactatgagtatctcagaaataaagagtgccttttc---tgtgttgtgtgtttgaattgaaacatgaattttcatatttcaagtta |
104 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
21746581 |
ccttcttgagtcttgactatgagtatttcaaaaataaagagtgtctttttctttgtgatgagtgtttgaattgaaacatgaattttcatatttcaagtta |
21746680 |
T |
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| Q |
105 |
atttatttaaattaata |
121 |
Q |
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||||||| |||| |||| |
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| T |
21746681 |
atttattcaaataaata |
21746697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 21803396 - 21803282
Alignment:
| Q |
8 |
ccttcttgagtcttgactatgagtatctcagaaataaagagtgcctttt-ctgtgt--tgtgtgtttgaattgaaacatgaattttcatatttcaagtta |
104 |
Q |
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|||||||||||||||||||||||||| ||| |||||||| | ||||||| || ||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21803396 |
ccttcttgagtcttgactatgagtatttcaaaaataaagtgagcctttttctttgtaatgtgtgtttgaattgaaacatgaattttcatattttaagtta |
21803297 |
T |
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| Q |
105 |
atttatttaaattaa |
119 |
Q |
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||||||| ||||||| |
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| T |
21803296 |
atttattcaaattaa |
21803282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 21648461 - 21648575
Alignment:
| Q |
7 |
accttcttgagtcttgactatgagtatctcagaaataaagagtgccttttc---tgtgttgtgtgtttgaattgaaacatgaattttcatatttcaagtt |
103 |
Q |
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|||||||| ||||||||||||| |||| | |||| ||||||| ||||| |||| ||||| | |||||||||||||||||||||||||||||||| |
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| T |
21648461 |
accttctttagtcttgactatgtgtatttataaaatgaagagtgtctttttgattgtgctgtgtataagaattgaaacatgaattttcatatttcaagtt |
21648560 |
T |
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| Q |
104 |
aatttatttaaatta |
118 |
Q |
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|||||||| |||||| |
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| T |
21648561 |
aatttattcaaatta |
21648575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 21667273 - 21667342
Alignment:
| Q |
21 |
tgactatgagtatctcagaaataaagagtgcctttt---ctgtgttgtgtgtttgaattgaaacatgaat |
87 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
21667273 |
tgactatgagtatttcaaaaataaagagtgccttttttcctgtattgtgtgtttgaattgaaacatgaat |
21667342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 21698398 - 21698463
Alignment:
| Q |
21 |
tgactatgagtatctcagaaataaagagtgcc-ttttctgtgttgtgtgtttgaattgaaacatgaat |
87 |
Q |
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| T |
21698398 |
tgactatgagta-ctcaaaaataaagagtgcctttttctgtgttgtgtg-ttgaattgaaacatgaat |
21698463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 21683615 - 21683661
Alignment:
| Q |
72 |
gaattgaaacatgaattttcatatttcaagttaatttatttaaatta |
118 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
21683615 |
gaattgaaacatgaattttcatatttcaacttaatttattcaaatta |
21683661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 21728385 - 21728431
Alignment:
| Q |
72 |
gaattgaaacatgaattttcatatttcaagttaatttatttaaatta |
118 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
21728385 |
gaattgaaacatgaactttcatatttcaagttaatttattcaaatta |
21728431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 21717678 - 21717724
Alignment:
| Q |
72 |
gaattgaaacatgaattttcatatttcaagttaatttatttaaatta |
118 |
Q |
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|||||||||||||||||||||||| | ||||||||||||| |||||| |
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| T |
21717678 |
gaattgaaacatgaattttcatatattaagttaatttattcaaatta |
21717724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 21794176 - 21794216
Alignment:
| Q |
62 |
ttgtgtgtttgaattgaaacatgaattttcatatttcaagt |
102 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||| |
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| T |
21794176 |
ttgtctgtttgaattgaaacatgaattgtcatatttcaagt |
21794216 |
T |
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