View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4578-Insertion-3 (Length: 1026)
Name: NF4578-Insertion-3
Description: NF4578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4578-Insertion-3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 790; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 8 - 1009
Target Start/End: Complemental strand, 32616966 - 32615962
Alignment:
| Q |
8 |
ctgatttcattagcaactgccaaagaggttggcctaaaagccaatctggtacaatgtcttggcaaatgtggggatgatgttctttcttgtgtcactgggt |
107 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32616966 |
ctgatttcattagcaactgccgaagaggttggcctaaaagccaatctagtacaatgtcttggcaaatgtggggatgatgttctttcttgtgtcactggct |
32616867 |
T |
|
| Q |
108 |
gttacagttggaaagttgggaatttcttgggttgtgccataagttgtgaaggagctgatgtactgtgcatgaccagttgtgcaagtacccttatgcctcc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
32616866 |
gttacagttggaaagttgggaatttcttgggttgtgccataagttgtgaaggagctgatgtactgtgcatgaccagttgtgcaagtaccattatgcctcc |
32616767 |
T |
|
| Q |
208 |
atctgctcgtccggttccactgacataatctgctccccactgcttctattatgaccggcctatctatctatatttctttctaatatttttaagaataatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
32616766 |
atctgctcgtccggttccactgacataatctgctccccgctgcttctatcatgatcggcctatctatccatatttctttctaatatttttaagaataatt |
32616667 |
T |
|
| Q |
308 |
tcagtgaaagttgttggatcatattcataacactgatgtaagcatctgatggcttgcttggccgttgtaatttgcctttaggcatttaataattgtatta |
407 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
32616666 |
tcagtgaaagttgttgaatcatattcatgacattgatgtaagcatctggtggcttgcttggccattgtaatttgcctttaggcatttaataattgtatta |
32616567 |
T |
|
| Q |
408 |
tggcaatnnnnnnn--tagttaatgttgatatactattactcctatctttttattttataagatgtgtgtgtaacgagtgccttaatgacactggcnnnn |
505 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
32616566 |
tggcaataaaaaaaaatagttaatgttgatatactattactcctatctttttattttataagatgtgtgtgtaaccagtgccttaatgacacttgagaaa |
32616467 |
T |
|
| Q |
506 |
nnnncaa---tcaatatgattgtttaaaaacaacatttaatacattcttaacttcaaatactacacctttcaatnnnnnnn-tccatttataatatttta |
601 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
32616466 |
aaaaaaaaaatcaatatgattgtttaaaaacaacatttaatacattcttaacttcaaatactacacctttcaataaaaaaaatccatttataatatttta |
32616367 |
T |
|
| Q |
602 |
accattttcttgataattattttctgttttcgccataataaatagttatcataatattattctatgcttattcaacaaaaatcacattgtattcacttaa |
701 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32616366 |
accattttcttgataattattttctgttttcgccataataaatagttatcataatattattctatgcttattcaacaaaaatcacattgtattcacttaa |
32616267 |
T |
|
| Q |
702 |
ttcttgtgatgataggatggaatcaaacaagagtcaaagctaaaatcaataaactgaccacattacaagaggatacgggttccaaatatctaagttaggc |
801 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32616266 |
ttcttgtgatgataggatggaatcaaacaagagtcaaagctaaaatcaataaactgaccacattacaagaggatacgggttccaaatatctaagttaggc |
32616167 |
T |
|
| Q |
802 |
aaatgatgactaacaggacagagagaataaatactatagaaattgtagtttgctatatgtgccagagttgccccctactcacagtaaaaactcgtcttgt |
901 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
32616166 |
aaatgatgactaacaggacagagagaataaatactatag-aattgtagtttgctatatgtgccagagttgccccctactcacagtaacaactcgtcttgt |
32616068 |
T |
|
| Q |
902 |
acatctggctatgacaccagaaactaaatattgttgtttgaaatattagacttgaacaaaaacattc-attttccaccgaatttctgggttggggcgact |
1000 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||| |
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|
| T |
32616067 |
acatctggctatgacaccagaaactaaata-tgttgtttgaaatattagacttgacaaaaaacattcaattttccaccg-atttctgggtt-gggcgact |
32615971 |
T |
|
| Q |
1001 |
tctcttttc |
1009 |
Q |
| |
|
||||||||| |
|
|
| T |
32615970 |
tctcttttc |
32615962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 412
Target Start/End: Complemental strand, 32619998 - 32619598
Alignment:
| Q |
8 |
ctgatttcattagcaactgccaaagaggttggcctaaaagccaatctggtacaatgtcttggcaaatgtggggatgatgttctttcttgtgtcactgggt |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
32619998 |
ctgatttcattagcaactgccgaagaggttggcctaaaagccaatctggtacaatgtcttagcaaatgtggggatgatgttatttcttgtgtcactggct |
32619899 |
T |
|
| Q |
108 |
gttacagttggaaagttgggaatttcttgggttgtgccataagttgtgaaggagctgatgtactgtgcatgaccagttgtgcaagtacccttatgcctcc |
207 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
32619898 |
gttacagtaggaaagttgagaatttcttgggttgtgccatgaattgtgaaggagctgatgcactgtgcatgaccagttgcgcaagcacccttatgcctcc |
32619799 |
T |
|
| Q |
208 |
atctgctcgtccggttccactgacataatctgctccccactgcttctattatgaccggcctatctatctatatttctttctaatatttttaagaataatt |
307 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
32619798 |
atctgctcgtctggttccactgccataatctgctcccctctgcttctattatga----tctatctatctatacatctttctaatatattaaagaataatt |
32619703 |
T |
|
| Q |
308 |
tcagtgaaagttgttggatcatattcataacactgatgtaagcatctgatggcttgcttggccgttgtaatttgcctttaggcatttaataattgtatta |
407 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32619702 |
tcactgaaagttgttgaatcatattcataacactgatgtaagcatcttgtggcttgcttagccattgtaatttgcctttaggcatttaataattgtatta |
32619603 |
T |
|
| Q |
408 |
tggca |
412 |
Q |
| |
|
||||| |
|
|
| T |
32619602 |
tggca |
32619598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 523 - 647
Target Start/End: Complemental strand, 32619347 - 32619220
Alignment:
| Q |
523 |
tgtttaaaaacaacatttaataca-----ttcttaacttcaaatactacacctttcaatnnnnnnn-tccatttataatattttaaccattttcttgata |
616 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||| |
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|
| T |
32619347 |
tgtttaaaaacaatatttaatacagtacattcttaacttcaaatattacacctttcaataaaaaaaatccatttc--atattttaaccaatttcttgata |
32619250 |
T |
|
| Q |
617 |
attattttctgttttcgccataataaatagt |
647 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||| |
|
|
| T |
32619249 |
atta-tttatgttttcaccataataaatagt |
32619220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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