View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4578-Insertion-6 (Length: 616)
Name: NF4578-Insertion-6
Description: NF4578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4578-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 7 - 616
Target Start/End: Complemental strand, 30888573 - 30887964
Alignment:
| Q |
7 |
aatcttgtggcaaagaagaggtgatgttttattcatttgatgtcggcatggttgtacgatttcttatcattggttgatggatgtcaattattataataat |
106 |
Q |
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| T |
30888573 |
aatcttgtggcaaagaagaggtgatgttttattcatttgatgtcggcatggttgtacgatttcttatcattggttgatggatgtcaattattataataat |
30888474 |
T |
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| Q |
107 |
aattagacaaaatgtataaatgatttatacatgggatatggttgttgaaatgtctatttttatgatacgaatcacagaagaattaagatggttaagacaa |
206 |
Q |
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| T |
30888473 |
aattagacaaaatgtataaatgatttatacatgggatatggttgttgaaatgtctatttttatgatacgaatcacagaagaattaagatggttaagacaa |
30888374 |
T |
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| Q |
207 |
tgatacgagaatgaagagaaatagtagtccattttgtatgataaaaagaagaaataatgtgcacaacttctacaaaaattttaaaaccattttgtttgag |
306 |
Q |
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| T |
30888373 |
tgatacgagaatgaagagaaatagtagtccattttgtatgataaaaagaagaaataatgtgcacaacttctacaaaagttttaaaaccattttgtttgag |
30888274 |
T |
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| Q |
307 |
nnnnnnnnatcactattgttattccatctatctnnnnnnnntataaataataaaactgtggtgatttgataaattcaattgttgtttatcgtgaattttg |
406 |
Q |
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| T |
30888273 |
ttttttttatcactattgttatttcatctatctaaaaaaaatataaataataaaactatggtgatttgataaatttaattgttgtttatcgtgaattttg |
30888174 |
T |
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| Q |
407 |
gtaattcattgtgattttgtaaaactcatcgtgcatccaaacatgtgtacttataatgttttttgttttagtttaatggaaaagnnnnnnnntatcattt |
506 |
Q |
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| T |
30888173 |
atagttcattgtgattttgtaaaactcatcgtgcatccaaacatgtgtacttataatgttttttgttttaatttaatggaaaagaaaaaaaatatcattt |
30888074 |
T |
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| Q |
507 |
atatttcaaattgtggcttgaannnnnnnatagtcattatgcaaataatttggctactcatctagggatgataatagaaatggtttgctagagtttcttt |
606 |
Q |
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| T |
30888073 |
atatttcaaattgtggcttgaatttttttatagccattatgcaaataatttggctactcatctagggatgataatagaaatggtttgctagaatttcttt |
30887974 |
T |
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| Q |
607 |
tctacttgta |
616 |
Q |
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| T |
30887973 |
tctacttgta |
30887964 |
T |
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