View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4578-Insertion-8 (Length: 537)
Name: NF4578-Insertion-8
Description: NF4578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4578-Insertion-8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 30 - 521
Target Start/End: Complemental strand, 14064741 - 14064251
Alignment:
| Q |
30 |
gtgtcaaccatacactatttcacattagcacaaactactacaagtaagattagtatgacaagaaacacaataagtcctccactttcaaataataaccact |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14064741 |
gtgtcaaccatacactatttcacattagcacaaactactacaagtaagattagtatgacaaggaacacaataagtcctccactttcaaataataaccact |
14064642 |
T |
|
| Q |
130 |
cactctccatgtatggttagccataatctgatctgacaaatttcctatatttatgcattcttctctttcttgtataaatcatttataacaattagcaatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14064641 |
cactctccatgtatggttagccataatctgatctgacaaatttcctatatttatgtattcttctctttcttgtataaatcatttgtaacaattagcaatg |
14064542 |
T |
|
| Q |
230 |
ctcttttaattccatacatgaaagaaagcgatgatgatgagatacaagaaagatttatacaagagcattgtataaccttatattagtctctcnnnnnnnn |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14064541 |
ctcttttaattccatacatgaaagaaagcgatgatgatgagatacaagaaagatttatacaagagcattgtataaccttatattagtctctcaaaaaaaa |
14064442 |
T |
|
| Q |
330 |
nnnncatacattaaattatattataaaatgatgagatacaatgttaaggattaatt--nnnnnnnnnntggtaaggataatatcatggatatgatgacca |
427 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14064441 |
aa---acacattaaattatattataaaatgatgagatacaatgttaaggattaattcaaaaaaaaaaatggtaaggataatatcatggatatgatgacct |
14064345 |
T |
|
| Q |
428 |
ccatttatttatgtttacattagctgtaaataatcctcattcctacatgggctagtggagcaatgagcttagtgtctcatttcagttcctctag |
521 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14064344 |
ccatttatttatgtttatattagctgtaagtaatcctcattcctacatgggctagtggagcaatgagcttagtgtctcatttcagttcctctag |
14064251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 1070850 - 1070903
Alignment:
| Q |
167 |
aaatttcctatatttatgcattcttctctttcttgtataaatcatttataacaa |
220 |
Q |
| |
|
||||||||||| |||||||||| |||| |||||| |||||||||||| |||||| |
|
|
| T |
1070850 |
aaatttcctatctttatgcatttttctttttcttatataaatcatttttaacaa |
1070903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 5319614 - 5319526
Alignment:
| Q |
121 |
ataaccactcactctcc-atgtatggttagccataatctgatctgacaaatttcctatatttatgcattcttctctttcttgtataaat |
208 |
Q |
| |
|
|||| |||||||| ||| |||| || |||||||| || |||| || ||||| ||| || || |||||||||||| |||||||||||||| |
|
|
| T |
5319614 |
ataatcactcactttcctatgtttgattagccattatttgatttgtcaaatatcccattttcatgcattcttctatttcttgtataaat |
5319526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University