View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4578-Insertion-9 (Length: 498)

Name: NF4578-Insertion-9
Description: NF4578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4578-Insertion-9
NF4578-Insertion-9
[»] chr1 (1 HSPs)
chr1 (7-498)||(43141257-43141740)


Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 7 - 498
Target Start/End: Original strand, 43141257 - 43141740
Alignment:
Q  7 atccagaaccctagaccagcagatgcagactttgtttacgtgatatatatatgtgtgtgtnnnnnnnnnnnnnnnnntacaatctagtaatttttatctt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||    
T  43141257 atccagaaccctagaccagcagatgcagactttgtttacgtgatatatatatgtgtgtgtgcacgcgcg--------tacaatctagtaatttttatctt 43141348  T
Q  107 tatttttccgtatatttaaactacgaaattgatatcaagttcatgccccattgaccataatcgttagacataatgaaaagattccaaaatgtgggcacct 206  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43141349 tatttttccgtttatttaaactacgaaattgatatcaagttcatgccccattgaccataatcgttagacataatgaaaagattccaaaatgtgggcacct 43141448  T
Q  207 aattatttttgacttgtgataagatatagtggttacactatggtcagggggactaaagagagaaagaaattaagataaacaagcaatatgcaaaatgtta 306  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43141449 aattatttttgacttgtgataagatatagtggttacactatggccagggggactaaagagagaaagaaattaagataaacaagcaatatgcaaaatgtta 43141548  T
Q  307 ttttgacttgtcatttattttcatgtaaaagataaaaaggtagtggttggttgatgtggaatgtaaagaagagagaattatgcatagctttgatgtgtta 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43141549 ttttgacttgtcatttattttcatgtaaaagataaaaaggtagtggttggttgatgtagaatgtaaagaagagagaattatgcatagctttgatgtgtta 43141648  T
Q  407 ggaagttagaaaacaacacatcatgcatgcccatcaattaggtatgctccttttgttatcttttccatccactttttgaccaaaacccatga 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43141649 ggaagttagaaaacaacacatcatgcatgcccatcaattaggtatgctccttttgttatcttttccatccactttttgaccaaaacccatga 43141740  T

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