View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4578_high_10 (Length: 202)

Name: NF4578_high_10
Description: NF4578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4578_high_10
NF4578_high_10
[»] chr8 (10 HSPs)
chr8 (69-193)||(7614107-7614231)
chr8 (67-169)||(8550541-8550643)
chr8 (67-169)||(32987371-32987473)
chr8 (67-167)||(4836629-4836729)
chr8 (67-167)||(4842074-4842174)
chr8 (67-167)||(39022012-39022112)
chr8 (67-169)||(7058151-7058253)
chr8 (67-169)||(15260777-15260879)
chr8 (69-145)||(15181830-15181906)
chr8 (110-169)||(2750105-2750164)
[»] chr4 (12 HSPs)
chr4 (67-193)||(36621603-36621729)
chr4 (67-169)||(45256012-45256114)
chr4 (67-169)||(637891-637993)
chr4 (67-169)||(4168395-4168497)
chr4 (67-169)||(27764277-27764379)
chr4 (67-169)||(22181171-22181273)
chr4 (67-169)||(26447338-26447440)
chr4 (67-169)||(38485600-38485702)
chr4 (67-169)||(21097177-21097279)
chr4 (70-169)||(51837016-51837116)
chr4 (69-145)||(50563679-50563755)
chr4 (119-169)||(18923348-18923398)
[»] chr7 (11 HSPs)
chr7 (39-193)||(33797945-33798094)
chr7 (67-167)||(30428910-30429010)
chr7 (72-169)||(46573426-46573523)
chr7 (67-169)||(15974862-15974964)
chr7 (67-169)||(46024064-46024166)
chr7 (67-145)||(5757424-5757502)
chr7 (69-145)||(32090617-32090693)
chr7 (67-125)||(48690932-48690990)
chr7 (67-105)||(28396759-28396797)
chr7 (67-117)||(48305273-48305323)
chr7 (68-117)||(48691030-48691079)
[»] chr1 (9 HSPs)
chr1 (71-193)||(30802437-30802559)
chr1 (67-169)||(18056821-18056923)
chr1 (70-169)||(22348079-22348178)
chr1 (68-169)||(179646-179747)
chr1 (69-169)||(23320011-23320111)
chr1 (67-169)||(45889633-45889735)
chr1 (69-169)||(8402237-8402337)
chr1 (69-145)||(35198131-35198207)
chr1 (69-145)||(37639381-37639457)
[»] chr3 (10 HSPs)
chr3 (67-193)||(16277316-16277442)
chr3 (67-169)||(51362364-51362466)
chr3 (67-169)||(52987576-52987678)
chr3 (67-169)||(50754043-50754145)
chr3 (67-169)||(39099234-39099336)
chr3 (67-168)||(19385242-19385343)
chr3 (67-169)||(7045227-7045328)
chr3 (71-169)||(8718142-8718240)
chr3 (71-169)||(9070029-9070127)
chr3 (45-116)||(17627210-17627281)
[»] chr5 (10 HSPs)
chr5 (67-169)||(28070079-28070181)
chr5 (67-169)||(13362807-13362909)
chr5 (67-169)||(23335633-23335735)
chr5 (67-167)||(2826995-2827095)
chr5 (69-146)||(16668743-16668820)
chr5 (69-145)||(18465506-18465582)
chr5 (67-125)||(34329164-34329222)
chr5 (67-116)||(25017196-25017245)
chr5 (129-169)||(42512273-42512313)
chr5 (70-145)||(8948930-8949003)
[»] scaffold0194 (1 HSPs)
scaffold0194 (67-169)||(27644-27746)
[»] scaffold0097 (1 HSPs)
scaffold0097 (67-169)||(13650-13752)
[»] chr6 (7 HSPs)
chr6 (67-169)||(24737617-24737719)
chr6 (68-169)||(877246-877347)
chr6 (67-169)||(33346297-33346399)
chr6 (69-145)||(18611228-18611304)
chr6 (67-145)||(29157263-29157341)
chr6 (72-117)||(34399683-34399728)
chr6 (67-125)||(15034945-15035003)
[»] chr2 (7 HSPs)
chr2 (67-169)||(20709811-20709913)
chr2 (67-161)||(18298045-18298139)
chr2 (67-169)||(25192929-25193031)
chr2 (72-145)||(4281738-4281811)
chr2 (69-125)||(4579788-4579844)
chr2 (66-117)||(14551297-14551348)
chr2 (69-145)||(25995326-25995402)
[»] scaffold0238 (1 HSPs)
scaffold0238 (67-169)||(25158-25260)
[»] scaffold0337 (1 HSPs)
scaffold0337 (67-117)||(7054-7104)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 69 - 193
Target Start/End: Original strand, 7614107 - 7614231
Alignment:
Q  69 tgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatttc 168  Q
    |||||||||| |||||||  |||||||||| ||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||    
T  7614107 tgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcataggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttc 7614206  T
Q  169 ttccaaaacagtcatgttcatctca 193  Q
    |||||||||||||||||||||||||    
T  7614207 ttccaaaacagtcatgttcatctca 7614231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 8550541 - 8550643
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||||| ||||||||||| |||| ||||| ||||| ||||||||||||||||||||||||||||    
T  8550541 cgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcataagcttctcaaattacaccaaatcaaacttcatttgcttcaaacatt 8550640  T
Q  167 tct 169  Q
    |||    
T  8550641 tct 8550643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 32987473 - 32987371
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  32987473 cgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 32987374  T
Q  167 tct 169  Q
    |||    
T  32987373 tct 32987371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 4836729 - 4836629
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  4836729 cgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaagcttttcaaactacaccaaatcaaacttcatttgcttcaaacatt 4836630  T
Q  167 t 167  Q
    |    
T  4836629 t 4836629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 4842174 - 4842074
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  4842174 cgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaagcttttcaaactacaccaaatcaaacttcatttgcttcaaacatt 4842075  T
Q  167 t 167  Q
    |    
T  4842074 t 4842074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 39022012 - 39022112
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||| ||||||||||||||||| || |||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  39022012 cgtgcataaacacttcacaatcatcagatctagtgtacatgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 39022111  T
Q  167 t 167  Q
    |    
T  39022112 t 39022112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 7058151 - 7058253
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  ||| |||||||||||||||| |||||||| ||  ||| ||||||||||| |||||||||||||||||||||||||| |    
T  7058151 cgtgcataaacacttcacaaccatccgatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgcttcaaacact 7058250  T
Q  167 tct 169  Q
    |||    
T  7058251 tct 7058253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 15260879 - 15260777
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||| ||||||||||||||| ||||||||  | |||| ||||||||||| |||||||||||||||||||||||| |||    
T  15260879 cgtgcataaacacttcacaaccatcaaatctagtgtacacgtttaataatccaaggcttctcaaactacaccaaatcaaacttcatttgcttcaaatatt 15260780  T
Q  167 tct 169  Q
    |||    
T  15260779 tct 15260777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 15181830 - 15181906
Alignment:
Q  69 tgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaa 145  Q
    |||||||||| |||||||  |||||||||||||||||||| |||||||| || | || ||||||||||| |||||||    
T  15181830 tgcataaacacttcacaagcatcagatctagtgtacacgtgtaataatcttaggtttctcaaactacaccaaatcaa 15181906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 2750105 - 2750164
Alignment:
Q  110 taataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatttct 169  Q
    |||||||||||  ||| ||||||||||| |||||||||||||||| ||| ||||||||||    
T  2750105 taataatcatagacttctcaaactacaccaaatcaaacttcatttactttaaacatttct 2750164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 193
Target Start/End: Complemental strand, 36621729 - 36621603
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||| ||||||||| |||||||| ||||||| | ||||||||| ||||||||||||||||||||||||||||    
T  36621729 cgtgcataaacacttcacaaccatcagatctaatgtacacgtgtaataatcctatgcttcttaaactacaccaaatcaaacttcatttgcttcaaacatt 36621630  T
Q  167 tcttccaaaacagtcatgttcatctca 193  Q
    |||||||||||||||||||||||||||    
T  36621629 tcttccaaaacagtcatgttcatctca 36621603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 45256012 - 45256114
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| ||||||| |||||||| |||||||||||| |||||||| || |||| ||||||||||  ||||||||||||||||||||||||||||    
T  45256012 cgtgcataaacacttcacaactatcagatatagtgtacacgtgtaataatcctaggcttttcaaactacatcaaatcaaacttcatttgcttcaaacatt 45256111  T
Q  167 tct 169  Q
    |||    
T  45256112 tct 45256114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 637891 - 637993
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  ||||||||||||||||| || |||||||  || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  637891 cgtgcataaacacttcacaaccatcagatctagtgtacatgtgtaataattttaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 637990  T
Q  167 tct 169  Q
    |||    
T  637991 tct 637993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 4168395 - 4168497
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||| | |||||||| || | || ||||||||||| ||||||||||||||||| ||||||||||    
T  4168395 cgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctaggtttctcaaactacaccaaatcaaacttcatttgtttcaaacatt 4168494  T
Q  167 tct 169  Q
    |||    
T  4168495 tct 4168497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 27764277 - 27764379
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| ||| |||  |||||||||||||||||||| |||||||| || |||| ||||||||||| ||||||||| | ||||||||||||||||    
T  27764277 cgtgcataaacacttcgcaaccatcagatctagtgtacacgtgtaataatcctacgcttctcaaactacaccaaatcaaaccttatttgcttcaaacatt 27764376  T
Q  167 tct 169  Q
    |||    
T  27764377 tct 27764379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 22181273 - 22181171
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||| | |||||||  ||||||| |||||||||||| |||||||| || | || ||||||||||| |||||||||||||||||| |||||||||    
T  22181273 cgtgcataaaaacttcacaaccatcagatttagtgtacacgtgtaataatcctaggtttctcaaactacaccaaatcaaacttcatttgcctcaaacatt 22181174  T
Q  167 tct 169  Q
    |||    
T  22181173 tct 22181171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 26447440 - 26447338
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||||| |||||||  || ||||  |||| ||||| |||||||| |||||||||||||||||||    
T  26447440 cgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattctaggcttcacaaattacaccaaatcaaatttcatttgcttcaaacatt 26447341  T
Q  167 tct 169  Q
    |||    
T  26447340 tct 26447338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 38485702 - 38485600
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||  |||||||  |||||||||| ||||||||| |||||||| || |||| ||||| ||||  ||||||||||||||||||||||||||||    
T  38485702 cgtgcataaacgcttcacaaccatcagatctaatgtacacgtgtaataatcctaggcttctcaaaatacattaaatcaaacttcatttgcttcaaacatt 38485603  T
Q  167 tct 169  Q
    |||    
T  38485602 tct 38485600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 21097177 - 21097279
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||| ||||||| |||||||  || ||||||||| ||||||| |||||||  || |||||| ||| ||||| ||||||||||||||||||||||||||||    
T  21097177 cgtgtataaacacttcacaaccattagatctagtttacacgtgtaataattctaagcttattaaattacaccaaatcaaacttcatttgcttcaaacatt 21097276  T
Q  167 tct 169  Q
    |||    
T  21097277 tct 21097279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 51837116 - 51837016
Alignment:
Q  70 gcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttca-tttgcttcaaacatttc 168  Q
    ||||||| | |||||||  ||||||| || ||||||||| |||||||| || |||| ||||||||||| ||||||||||||| ||| |||||||||||||    
T  51837116 gcataaatacttcacaaccatcagatttaatgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcattttacttcaaacatttc 51837017  T
Q  169 t 169  Q
    |    
T  51837016 t 51837016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 50563755 - 50563679
Alignment:
Q  69 tgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaa 145  Q
    |||||||||| |||||||  |||||||||||||||||||| ||||||| ||| | || ||||||||||| |||||||    
T  50563755 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattataggtttctcaaactacaccaaatcaa 50563679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 18923348 - 18923398
Alignment:
Q  119 tatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatttct 169  Q
    ||||||| ||||||||||| |||||||||||||||||||||||| ||||||    
T  18923348 tatgcttctcaaactacaccaaatcaaacttcatttgcttcaaatatttct 18923398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 33797945 - 33798094
Alignment:
Q  39 atgggcaaagttatggtgcataaggcaacgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacaca 138  Q
    ||||||||||||||||||||||      |||||||||||| |||||||  |||||||||||| ||||||| |||||||| ||  ||| ||||||||||      
T  33797945 atgggcaaagttatggtgcatac-----cgtgcataaacatttcacaaccatcagatctagtatacacgtgtaataatcctagacttctcaaactacatc 33798039  T
Q  139 aaatcaaacttcatttgcttcaaacatttcttccaaaacagtcatgttcatctca 193  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33798040 aaatcaaacttcatttgcttcaaacatttcttccaaaacaatcatgttcatctca 33798094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 30428910 - 30429010
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  30428910 cgtgcataaacatttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 30429009  T
Q  167 t 167  Q
    |    
T  30429010 t 30429010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 46573523 - 46573426
Alignment:
Q  72 ataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatttct 169  Q
    ||||||| |||||||  |||||||||||||||||||| |||||||| || |||| ||||||||||| |||||||||||||||||||||||||||||||    
T  46573523 ataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttct 46573426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 15974964 - 15974862
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||| || |||||||||| | |||||||| || |||||||||| ||||| |||||||||||||| |||||||||||||    
T  15974964 cgtgcataaacacttcacaaccatcatatttagtgtacacatgtaataatcttaggcttatcaaagtacaccaaatcaaacttcatctgcttcaaacatt 15974865  T
Q  167 tct 169  Q
    |||    
T  15974864 tct 15974862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 46024064 - 46024166
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  ||||||| |||||||||||| |||||||| ||  ||| ||||||||||  |||||||||||||||||||||||| |||    
T  46024064 cgtgcataaacacttcacaaccatcagatatagtgtacacgtgtaataatcctagacttctcaaactacattaaatcaaacttcatttgcttcaaatatt 46024163  T
Q  167 tct 169  Q
    |||    
T  46024164 tct 46024166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 5757424 - 5757502
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaa 145  Q
    |||||||||||| |||||||  |||||||||||||||||||| |||||||| ||  ||| ||||||||||| |||||||    
T  5757424 cgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaa 5757502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 32090617 - 32090693
Alignment:
Q  69 tgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaa 145  Q
    ||||||||||||||| ||  |||| ||||||| ||||||| ||||||||||| |||| ||||||||||| |||||||    
T  32090617 tgcataaacaattcagaaccatcaaatctagtatacacgtgtaataatcataggcttctcaaactacaccaaatcaa 32090693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 48690932 - 48690990
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgctt 125  Q
    |||||||||||| |||||||  |||| ||||||||||||||| ||||||||||| ||||    
T  48690932 cgtgcataaacagttcacaaccatcaaatctagtgtacacgtgtaataatcataggctt 48690990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 28396759 - 28396797
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtaca 105  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  28396759 cgtgcataaacatttcacaatcatcagatctagtgtaca 28396797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 48305273 - 48305323
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatc 117  Q
    |||||||||||| || ||||  ||| |||||||||||||||||||||||||    
T  48305273 cgtgcataaacactttacaaacatcggatctagtgtacacgtataataatc 48305323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 48691030 - 48691079
Alignment:
Q  68 gtgcataaacaattcacaattatcagatctagtgtacacgtataataatc 117  Q
    ||||||| ||| |||||||  |||||||||||||||||||| ||||||||    
T  48691030 gtgcatagacacttcacaaccatcagatctagtgtacacgtgtaataatc 48691079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 30802437 - 30802559
Alignment:
Q  71 cataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatttctt 170  Q
    |||||||| |||||||  |||||||||||||||||||| |||||||| || |||| ||||||||||| |||||||||||||||||||||||| |||||||    
T  30802437 cataaacatttcacaaccatcagatctagtgtacacgtgtaataatcttaggcttctcaaactacaccaaatcaaacttcatttgcttcaaatatttctt 30802536  T
Q  171 ccaaaacagtcatgttcatctca 193  Q
    |||||| ||||||||||||||||    
T  30802537 ccaaaatagtcatgttcatctca 30802559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 18056821 - 18056923
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  18056821 cgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 18056920  T
Q  167 tct 169  Q
    |||    
T  18056921 tct 18056923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 22348079 - 22348178
Alignment:
Q  70 gcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatttct 169  Q
    ||||||||| |||||||  |||| ||||||||||||||| |||||||| || |||| ||||||||||| |||||||||||||||||||||||||||||||    
T  22348079 gcataaacacttcacaaccatcatatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatttct 22348178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 179646 - 179747
Alignment:
Q  68 gtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacattt 167  Q
    ||||||||||| |||||||  |||||||||||||||||||| ||||||||  | |||| ||||||||||| |||||||||||||||||||| ||||||||    
T  179646 gtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcccaagcttctcaaactacaccaaatcaaacttcatttgcttaaaacattt 179745  T
Q  168 ct 169  Q
    ||    
T  179746 ct 179747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 23320111 - 23320011
Alignment:
Q  69 tgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatttc 168  Q
    |||||||||| |||||||  |||||||||||||||||||| |||||||| ||  ||| ||||||||||| |||||||||||||||||||| |||||||||    
T  23320111 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgctttaaacatttc 23320012  T
Q  169 t 169  Q
    |    
T  23320011 t 23320011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 45889633 - 45889735
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| || ||||  |||||||||||| |||| || |||||||| || |||| ||||||||||| |||||||| ||||||| |||||||||||    
T  45889633 cgtgcataaacattttacaaccatcagatctagtatacatgtgtaataatcttaggcttctcaaactacaccaaatcaaatttcatttccttcaaacatt 45889732  T
Q  167 tct 169  Q
    |||    
T  45889733 tct 45889735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 69 - 169
Target Start/End: Complemental strand, 8402337 - 8402237
Alignment:
Q  69 tgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatttc 168  Q
    |||||||||| |||| ||  |||||||||||||||||| | |||||||| || | || |||||||| || |||||||||||||| |||||||||||||||    
T  8402337 tgcataaacacttcataaccatcagatctagtgtacacatgtaataatcctaggtttctcaaactaaaccaaatcaaacttcatctgcttcaaacatttc 8402238  T
Q  169 t 169  Q
    |    
T  8402237 t 8402237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 35198207 - 35198131
Alignment:
Q  69 tgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaa 145  Q
    |||||||||| ||||||   |||||||||||||||||||| |||||||| ||  ||| |||||||||||||||||||    
T  35198207 tgcataaacacttcacagccatcagatctagtgtacacgtgtaataatcctagacttttcaaactacacaaaatcaa 35198131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 37639381 - 37639457
Alignment:
Q  69 tgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaa 145  Q
    |||||||||| |||||||  |||||||||||||||||||| ||||||| |||  ||| ||||||||||| |||||||    
T  37639381 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataattatagacttctcaaactacaccaaatcaa 37639457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 67 - 193
Target Start/End: Complemental strand, 16277442 - 16277316
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||| ||||||||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||| ||||||||||    
T  16277442 cgtgcataaacacttcacaaccatcatatctagtgtacacgtgtaataatcctacgcttctcaaactacaccaaatcaaacttcatttgtttcaaacatt 16277343  T
Q  167 tcttccaaaacagtcatgttcatctca 193  Q
    | |||||||| ||||||||||||||||    
T  16277342 tattccaaaatagtcatgttcatctca 16277316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 51362466 - 51362364
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  ||||||| |||||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  51362466 cgtgcataaacacttcacaaccatcagatttagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 51362367  T
Q  167 tct 169  Q
    |||    
T  51362366 tct 51362364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 52987678 - 52987576
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||||| |||||||| || |||| ||||||||||| |||||||||||||||||||||||| |||    
T  52987678 cgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaatatt 52987579  T
Q  167 tct 169  Q
    |||    
T  52987578 tct 52987576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 50754043 - 50754145
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||| |||||||| |    
T  50754043 cgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgattcaaacact 50754142  T
Q  167 tct 169  Q
    |||    
T  50754143 tct 50754145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 39099234 - 39099336
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||| | |||||||  |||||||||||||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||| || |||||||    
T  39099234 cgtgcataaatatttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacactaaatcaaacttcatttgtttaaaacatt 39099333  T
Q  167 tct 169  Q
    |||    
T  39099334 tct 39099336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 19385343 - 19385242
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  ||||||| |||||||||||| |||||||  || |||| ||||||||||  ||||||||||||||||||||||| ||||    
T  19385343 cgtgcataaacacttcacaaccatcagatttagtgtacacgtgtaataattctaggcttctcaaactacatcaaatcaaacttcatttgcttcaatcatt 19385244  T
Q  167 tc 168  Q
    ||    
T  19385243 tc 19385242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 7045328 - 7045227
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||| ||||||| |||||||  |||||||||||||||||||| |||||||| || |||| ||| ||||||  ||||||||||| ||||||||||||||||    
T  7045328 cgtgtataaacacttcacaaccatcagatctagtgtacacgtgtaataatcgtaggcttctcagactacatcaaatcaaactt-atttgcttcaaacatt 7045230  T
Q  167 tct 169  Q
    |||    
T  7045229 tct 7045227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 8718142 - 8718240
Alignment:
Q  71 cataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatttct 169  Q
    |||||| | |||||||  ||||||||||||||||| || |||||||| || |||| | ||||||||| ||||||||||||||||| || ||||||||||    
T  8718142 cataaatacttcacaaccatcagatctagtgtacatgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgtttaaaacatttct 8718240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 9070029 - 9070127
Alignment:
Q  71 cataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatttct 169  Q
    |||||| | |||||||  ||||||||||||||||| || |||||||| || |||| | ||||||||| ||||||||||||||||| || ||||||||||    
T  9070029 cataaatacttcacaaccatcagatctagtgtacatgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgtttaaaacatttct 9070127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 17627281 - 17627210
Alignment:
Q  45 aaagttatggtgcataaggcaacgtgcataaacaattcacaattatcagatctagtgtacacgtataataat 116  Q
    |||||||||||||||||||    ||||||||||| |||||||  |||||||||||||||||||| |||||||    
T  17627281 aaagttatggtgcataaggatttgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataat 17627210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 28070181 - 28070079
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| ||||||| ||||||||||||||||||||| |||||||| ||  ||| ||||||||||| ||||||||||||||||||||||||||||    
T  28070181 cgtgcataaacacttcacaactatcagatctagtgtacacgtgtaataatcctagacttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 28070082  T
Q  167 tct 169  Q
    |||    
T  28070081 tct 28070079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 13362807 - 13362909
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  ||||||||||||||| |||| ||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||||    
T  13362807 cgtgcataaacacttcacaaccatcagatctagtgtatacgtgtaataatcataggcttctcaaactacaccaaatcaaaattcatttgcttcaaacatt 13362906  T
Q  167 tct 169  Q
    |||    
T  13362907 tct 13362909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 23335735 - 23335633
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||| ||||||||| |||||||||    
T  23335735 cgtgcataaacatttcacaaccatcagatctagtgtacacgtgtaataatcataggcttctcaaactacaccaaatcaaagttcatttgcatcaaacatt 23335636  T
Q  167 tct 169  Q
    |||    
T  23335635 tct 23335633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 2827095 - 2826995
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| || ||||  |||||||||||||||||||| |||| ||| || |||| ||||||||||| |||||||| |||||||||||||||||||    
T  2827095 cgtgcataaacactttacaaccatcagatctagtgtacacgtgtaattatcttaggcttctcaaactacaccaaatcaaatttcatttgcttcaaacatt 2826996  T
Q  167 t 167  Q
    |    
T  2826995 t 2826995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 16668820 - 16668743
Alignment:
Q  69 tgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaa 146  Q
    |||||||||| |||||||  |||||||||||||||||||| |||||||| || |||| ||||||||||| ||||||||    
T  16668820 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaa 16668743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 18465582 - 18465506
Alignment:
Q  69 tgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaa 145  Q
    |||||||||| |||||||  |||||||||||||||||||| |||||||| ||  ||| ||||||||||| |||||||    
T  18465582 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcttagacttctcaaactacaccaaatcaa 18465506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 34329164 - 34329222
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgctt 125  Q
    |||||||||||| |||||||  ||||||||||||||||||| |||||||||||| ||||    
T  34329164 cgtgcataaacacttcacaaccatcagatctagtgtacacgaataataatcataggctt 34329222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 25017245 - 25017196
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataat 116  Q
    |||||||||||| |||||||  |||||||||||||||||||| |||||||    
T  25017245 cgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataat 25017196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 42512273 - 42512313
Alignment:
Q  129 aaactacacaaaatcaaacttcatttgcttcaaacatttct 169  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  42512273 aaactacaccaaatcaaacttcatttacttcaaacatttct 42512313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 8948930 - 8949003
Alignment:
Q  70 gcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaa 145  Q
    ||||||||| |||| || |||||||| |||||||||||  | |||||| || |||| ||||||||||| |||||||    
T  8948930 gcataaacacttcaaaactatcagatttagtgtacacg--tgataatcctaggcttctcaaactacaccaaatcaa 8949003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 27644 - 27746
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| ||||||| ||| ||||||||||||||||| |||||||  || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  27644 cgtgcataaacacttcacaactataagatctagtgtacacgtgtaataattctaggcttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 27743  T
Q  167 tct 169  Q
    |||    
T  27744 tct 27746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 13650 - 13752
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||| | |||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  13650 cgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctacgcttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 13749  T
Q  167 tct 169  Q
    |||    
T  13750 tct 13752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 24737719 - 24737617
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||||| |||||||| || |||| | ||||||||| ||||||||||||||||||||||||||||    
T  24737719 cgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttcttaaactacaccaaatcaaacttcatttgcttcaaacatt 24737620  T
Q  167 tct 169  Q
    |||    
T  24737619 tct 24737617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 877246 - 877347
Alignment:
Q  68 gtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacattt 167  Q
    ||||||||||| |||||||  || |||||  |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||    
T  877246 gtgcataaacacttcacaaccattagatcaggtgtacacgtataataatcataagcttctcaaactacaccaaatcaaacttcatttgcttcaaacattt 877345  T
Q  168 ct 169  Q
    ||    
T  877346 ct 877347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 33346399 - 33346297
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||| ||||||||||||||| ||||||| ||| |||| |||||||||   |||||||||||| |||||||||||||||    
T  33346399 cgtgcataaacacttcacaaccatcaaatctagtgtacacgtgtaataattataggcttctcaaactacgtcaaatcaaacttcgtttgcttcaaacatt 33346300  T
Q  167 tct 169  Q
    |||    
T  33346299 tct 33346297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 18611228 - 18611304
Alignment:
Q  69 tgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaa 145  Q
    |||||||||| |||||||  |||||||||||||||||||| ||||||||||| |||| |||||| |||| |||||||    
T  18611228 tgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcataggcttctcaaaccacaccaaatcaa 18611304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 29157263 - 29157341
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaa 145  Q
    |||||||||||| || ||||  |||||||||||||||||||| |||||||  || |||| ||||||||||| |||||||    
T  29157263 cgtgcataaacactttacaaccatcagatctagtgtacacgtgtaataatactaggcttctcaaactacaccaaatcaa 29157341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 34399683 - 34399728
Alignment:
Q  72 ataaacaattcacaattatcagatctagtgtacacgtataataatc 117  Q
    ||||||| |||||||| |||||||||||||||||||| ||||||||    
T  34399683 ataaacacttcacaatcatcagatctagtgtacacgtgtaataatc 34399728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 15035003 - 15034945
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgctt 125  Q
    ||||||||||  ||||||||  ||||||||||||||||| || ||||||||||| ||||    
T  15035003 cgtgcataaatcattcacaaccatcagatctagtgtacatgtgtaataatcataggctt 15034945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 20709811 - 20709913
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  |||||||||||||||||| | |||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  20709811 cgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatcctacgcttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 20709910  T
Q  167 tct 169  Q
    |||    
T  20709911 tct 20709913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 18298139 - 18298045
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaa 161  Q
    |||||||||||| |||||||  |||||||||||||||||||| |||||||| || |||| ||||||||||| |||||||||||||||||||||||    
T  18298139 cgtgcataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggcttctcaaactacaccaaatcaaacttcatttgcttcaa 18298045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 25192929 - 25193031
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  || ||||||||||||||||| |||||||  || |||| ||||| ||||| ||||||||||||||||||||||||||||    
T  25192929 cgtgcataaacacttcacaaccattagatctagtgtacacgtgtaataattctaggcttctcaaattacaccaaatcaaacttcatttgcttcaaacatt 25193028  T
Q  167 tct 169  Q
    |||    
T  25193029 tct 25193031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 4281811 - 4281738
Alignment:
Q  72 ataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaa 145  Q
    ||||||| |||||||  |||||||||||||||||||| |||||||| || | || ||||||||||  |||||||    
T  4281811 ataaacacttcacaaccatcagatctagtgtacacgtgtaataatcctaggtttctcaaactacagcaaatcaa 4281738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 4579844 - 4579788
Alignment:
Q  69 tgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgctt 125  Q
    |||||||||| || ||||  |||||||||||||||||||| |||||||| |||||||    
T  4579844 tgcataaacactttacaaccatcagatctagtgtacacgtgtaataatcttatgctt 4579788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 14551348 - 14551297
Alignment:
Q  66 acgtgcataaacaattcacaattatcagatctagtgtacacgtataataatc 117  Q
    ||||||||||||| |||||||  ||||||||||||||||| || ||||||||    
T  14551348 acgtgcataaacacttcacaaccatcagatctagtgtacatgtgtaataatc 14551297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 25995326 - 25995402
Alignment:
Q  69 tgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaa 145  Q
    |||||||| | |||||||  ||||||| |||||||||||| |||||||| || |||  ||||| ||||| |||||||    
T  25995326 tgcataaatacttcacaaccatcagatttagtgtacacgtgtaataatcctaggctactcaaattacaccaaatcaa 25995402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 25260 - 25158
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatcatatgcttatcaaactacacaaaatcaaacttcatttgcttcaaacatt 166  Q
    |||||||||||| |||||||  ||||||| |||||||||||| | |||||| || | || ||||||||||| ||||||||||||||||||||||||||||    
T  25260 cgtgcataaacacttcacaaccatcagatttagtgtacacgtgtcataatcttaggtttctcaaactacaccaaatcaaacttcatttgcttcaaacatt 25161  T
Q  167 tct 169  Q
    |||    
T  25160 tct 25158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 7054 - 7104
Alignment:
Q  67 cgtgcataaacaattcacaattatcagatctagtgtacacgtataataatc 117  Q
    |||||||||||| |||||||  |||||||||||||||||| | ||||||||    
T  7054 cgtgcataaacacttcacaaccatcagatctagtgtacacatgtaataatc 7104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University