View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4578_high_5 (Length: 279)
Name: NF4578_high_5
Description: NF4578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4578_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 1307325 - 1307064
Alignment:
| Q |
1 |
aactaaatcaagttcataaacgttcaaattaacaccaaaagagtgaataagtaagaataccttgacgaaaatttccggaactttatcaccaattgcaagc |
100 |
Q |
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| T |
1307325 |
aactaaatcaagttcataaacgttcaaattaacaccaaaagagtgaataagtaagaataccttgacgaaaatttccggaactttatcaccaattgcaagc |
1307226 |
T |
|
| Q |
101 |
cgtttcggatctcttccacctgtttcatcaaaatctc--atcaattaactaccaaaacacacacaaaattaacatataattacacgattaaataaataaa |
198 |
Q |
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| T |
1307225 |
cgtttcggatctcttccacctgtttcatcaaaatctcatatcaattaactaccaaaacacacacaaaattaacatataattacacaattaaataaataaa |
1307126 |
T |
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| Q |
199 |
actgaaaattcgtgttaccttcagtgattaagcaaattgacttgcgcttacgggattgaaac |
260 |
Q |
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| T |
1307125 |
actgaaaattcgtgttaccttcagtgattgagcaaattgacttgcgcttacgggattgaaac |
1307064 |
T |
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