View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4578_high_7 (Length: 238)

Name: NF4578_high_7
Description: NF4578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4578_high_7
NF4578_high_7
[»] chr6 (11 HSPs)
chr6 (1-221)||(11170530-11170747)
chr6 (1-206)||(11209367-11209569)
chr6 (1-206)||(11275929-11276131)
chr6 (4-206)||(11196698-11196897)
chr6 (1-206)||(11156245-11156447)
chr6 (1-206)||(11161112-11161314)
chr6 (4-206)||(11199863-11200062)
chr6 (102-206)||(11241511-11241615)
chr6 (60-205)||(11132970-11133112)
chr6 (1-207)||(11314724-11314927)
chr6 (4-50)||(11241440-11241486)
[»] scaffold1207 (1 HSPs)
scaffold1207 (1-206)||(863-1065)
[»] chr7 (1 HSPs)
chr7 (155-219)||(8581662-8581726)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11170747 - 11170530
Alignment:
Q  1 ctttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttgataatgcaat 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||||||||||||    
T  11170747 ctttggacgtgtctgttctcacatttgagaatggtgatatcaatgttaaggccactggaggagacactcacctcgggggacaagactttgataatgcaat 11170648  T
Q  101 aatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgcttgcgagaga 200  Q
       ||||||||||||||||||| ||||||||||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  11170647 ---ggtgaaccattttgtgaaagagttcttgagaaaacataaactcgacattagtggagatccaagagccattaggaggctgaagactgcttgcgagaga 11170551  T
Q  201 gcaaaatgtacactttcatcc 221  Q
    |||||||||||||||||||||    
T  11170550 gcaaaatgtacactttcatcc 11170530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 11209569 - 11209367
Alignment:
Q  1 ctttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttgataatgcaat 100  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       
T  11209569 ctttggacgtgtctgttctcacatttgaggatggtgatatcaatgttaaggctattgcaggagacactcacctcgggggacaagactttgataatgc--- 11209473  T
Q  101 aatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgcttgcgagaga 200  Q
    |||||||||||||||||||||| |||||||||| ||| | ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11209472 aatggtgaaccattttgtgaaagagttcttgaggaaggaaaaaatggacattagtggaaatccaagagcccttaggaggctgaagactgcttgcgagaga 11209373  T
Q  201 gcaaaa 206  Q
    ||||||    
T  11209372 gcaaaa 11209367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 11276131 - 11275929
Alignment:
Q  1 ctttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttgataatgcaat 100  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||       
T  11276131 ctttggacgtgtctgttctcacttttgagaatggtgatatcaatgttaaggccattggaggagacactcacctcgggggacaagactttgataatgc--- 11276035  T
Q  101 aatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgcttgcgagaga 200  Q
    |||||||||||||||||||||| |||||||||| |||||||||   ||||| |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  11276034 aatggtgaaccattttgtgaaagagttcttgaggaagcataaaaatgacattagtggagatccaagagccattaggaggctgaagactgcttgcgagaga 11275935  T
Q  201 gcaaaa 206  Q
    | ||||    
T  11275934 gtaaaa 11275929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 11196897 - 11196698
Alignment:
Q  4 tggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttgataatgcaataat 103  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||   | |||    
T  11196897 tggacgtgtccattctcacatttgagaacggtgctatcaatgttaaggcgattgcaggagacactcaccttgggggacaagactttgataat---acaat 11196801  T
Q  104 ggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgcttgcgagagagca 203  Q
    ||||||||||||||||||| |||||| ||| ||| ||||| ||||||| |||||| |||||||||||||||||||| ||||| |||||||||||| ||||    
T  11196800 ggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaagca 11196701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 11156447 - 11156245
Alignment:
Q  1 ctttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttgataatgcaat 100  Q
    ||||||||||||| ||||||||||||||||| |||| ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||   |     
T  11156447 ctttggacgtgtccattctcacatttgagaaaggtgctatcaatgttaaggcgattgcaggagacactcaccttgggggacaagactttgataat---ac 11156351  T
Q  101 aatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgcttgcgagaga 200  Q
    |||||||||||||||||||||  |||||| ||| ||| ||||| ||||||| |||||| |||||||||||||||||||| ||||| |||||||||||| |    
T  11156350 aatggtgaaccattttgtgaatgagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaagtctgcttgcgagaaa 11156251  T
Q  201 gcaaaa 206  Q
    ||||||    
T  11156250 gcaaaa 11156245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 11161314 - 11161112
Alignment:
Q  1 ctttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttgataatgcaat 100  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||  ||||||||||||||||||||   |     
T  11161314 ctttggacgtgtctattctcacatttgagattggtgctatcaatgttaaggcgattgcaggagacactcaccttaggggacaagactttgataat---ac 11161218  T
Q  101 aatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgcttgcgagaga 200  Q
    |||||||||||||||||||||| |||||| ||| ||| ||||| ||||||| |||||| |||||||||||||||||||| ||||  |||||||||||| |    
T  11161217 aatggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggttgaactctgcttgcgagaaa 11161118  T
Q  201 gcaaaa 206  Q
    ||||||    
T  11161117 gcaaaa 11161112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 11200062 - 11199863
Alignment:
Q  4 tggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttgataatgcaataat 103  Q
    |||| ||||| |||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||   | |||    
T  11200062 tggatgtgtccattctcacatttgagaatggtgctatcaatgttaaggcgattgcaggagacactcaccttgggggacaagactttgataat---acaat 11199966  T
Q  104 ggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgcttgcgagagagca 203  Q
    ||||||||||||||||||| |||||| ||| ||| ||||| ||||||| |||||| ||||||||||||||||||||  |||| |||||||||||| ||||    
T  11199965 ggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtggagatccaagagcccttaggaggtagaagtctgcttgcgagaaagca 11199866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 11241511 - 11241615
Alignment:
Q  102 atggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgcttgcgagagag 201  Q
    ||||||||||||||||||||| |||||| ||| ||| ||||| ||||||| ||| || |||||||||||||||||||| ||||| |||||||||||| ||    
T  11241511 atggtgaaccattttgtgaaagagttctcgaggaagtataaaatcgacattagtagagatccaagagcccttaggaggttgaagtctgcttgcgagaaag 11241610  T
Q  202 caaaa 206  Q
    |||||    
T  11241611 caaaa 11241615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 11133112 - 11132970
Alignment:
Q  60 ggagacactcacctcgggggacaagactttgataatgcaataatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaa 159  Q
    ||||| |||||||||||||||||||||||||||||    | ||||||||||||||| |||||| |||||||||| ||||||||| | ||||| ||||||     
T  11133112 ggagatactcacctcgggggacaagactttgataa---cacaatggtgaaccatttcgtgaaagagttcttgaggaagcataaaattgacattagtggag 11133016  T
Q  160 atccaagagcccttaggaggctgaagactgcttgcgagagagcaaa 205  Q
    ||| || |||||||||  || ||||| |||| || |||| ||||||    
T  11133015 atcgaaaagcccttagacggttgaagtctgcatgtgagaaagcaaa 11132970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 11314724 - 11314927
Alignment:
Q  1 ctttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttgataatgcaat 100  Q
    ||||||| ||||||||||||||| ||||||||||||  ||||| |||| | |  |||  |||||||||||||| ||||||||||||||  |||||   |     
T  11314724 ctttggatgtgtctattctcacacttgagaatggtgccatcaaagttagggccgttggcggagacactcaccttgggggacaagacttcaataat---ac 11314820  T
Q  101 aatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgcttgcgagaga 200  Q
    |||||||||  |||||||| ||  ||||  ||  | | ||||| | ||||| |||||| ||  || | ||||||||||| ||||| | |||||||||| |    
T  11314821 aatggtgaaatattttgtggaagtgttccggaagaggtataaaatagacattagtggagatttaacatcccttaggaggttgaagtcagcttgcgagaaa 11314920  T
Q  201 gcaaaat 207  Q
    |||||||    
T  11314921 gcaaaat 11314927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 11241440 - 11241486
Alignment:
Q  4 tggacgtgtctattctcacatttgagaatggtgatatcaatgttaag 50  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||    
T  11241440 tggacgtgtccattctcacatttgagaatggtgctatcaatgttaag 11241486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 1065 - 863
Alignment:
Q  1 ctttggacgtgtctattctcacatttgagaatggtgatatcaatgttaagcctattgcaggagacactcacctcgggggacaagactttgataatgcaat 100  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||||||||||| ||       
T  1065 ctttggacgtgtctgttctcaaatttgagaatggtgatatcaatgttaaggctattgtaggagacactcacctcagggggcaagactttgataacgc--- 969  T
Q  101 aatggtgaaccattttgtgaaaaagttcttgagaaagcataaactcgacatcagtggaaatccaagagcccttaggaggctgaagactgcttgcgagaga 200  Q
    ||||||||||||||||||||||  |||||| || ||| ||||| ||||||| |||||| ||||||||||| |||||||||||||||||||||| ||||||    
T  968 aatggtgaaccattttgtgaaagtgttcttaaggaagtataaaatcgacattagtggagatccaagagccgttaggaggctgaagactgcttgtgagaga 869  T
Q  201 gcaaaa 206  Q
     |||||    
T  868 tcaaaa 863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 8581726 - 8581662
Alignment:
Q  155 tggaaatccaagagcccttaggaggctgaagactgcttgcgagagagcaaaatgtacactttcat 219  Q
    ||||||||||| |||| |||| ||| ||| ||||||||| |||||||| ||| | ||||||||||    
T  8581726 tggaaatccaaaagccattagaaggttgaggactgcttgtgagagagcgaaaaggacactttcat 8581662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University