View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4578_low_4 (Length: 294)
Name: NF4578_low_4
Description: NF4578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4578_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 7498725 - 7498461
Alignment:
| Q |
18 |
gtttgaatcagatgttacacccttcactttttaacttcagaaataatattgaggcaagtaatactgaagtaggaactctaggttttggtggagcaagtac |
117 |
Q |
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| T |
7498725 |
gtttgaatcagatgttacacccttcactttttaacttcagaaataatattgaggctagtaatactggagttggaactctaggttttggtggagcaagtac |
7498626 |
T |
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| Q |
118 |
ttcaagaattggtgctattctaaaacttggagattcttctattgctacaagttcaagctcaaacacaaacaagaaaaatgtcgtggctactacttctgca |
217 |
Q |
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| T |
7498625 |
ttcaagaattggtgctattctaaaacttggagattcttctattgctacaagttcaagctcaaacacaaacaaggaaaatgtcgtggctactacttctgca |
7498526 |
T |
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| Q |
218 |
atgaataatgatactgatcatgattcaaagtcaaacattgaagaagaaccctccgatttggattc |
282 |
Q |
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| T |
7498525 |
atggatgatgatactgatcatgattcaaaatcaaacattgaagaagaaccctccgatttggattc |
7498461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 124 - 275
Target Start/End: Complemental strand, 7490874 - 7490723
Alignment:
| Q |
124 |
aattggtgctattctaaaacttggagattcttctattgctacaagttcaagctcaaacacaaacaagaaaaatgtcgtggctactacttctgcaatgaat |
223 |
Q |
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| T |
7490874 |
aattggtgctattctaaaacttggagattcttctattgctacaagttcaagctcaaacacaaacaagaaaaatgttgtggctgctacttctgcaatggat |
7490775 |
T |
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| Q |
224 |
aatgatactgatcatgattcaaagtcaaacattgaagaagaaccctccgatt |
275 |
Q |
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| T |
7490774 |
gatgatactgatcatgattcaaagtcaaacattgaagaagaaccctccgatt |
7490723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 7491004 - 7490894
Alignment:
| Q |
18 |
gtttgaatcagatgttacacccttcactttttaacttcagaaataatattgaggcaagtaatactgaagtaggaactctaggttttggtggagcaagtac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7491004 |
gtttgaatcagatgttacacccttcactttttaacttcagaaataatattgaggcaagtaatactggagtaggaactctaggttttggtggagcaagtac |
7490905 |
T |
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| Q |
118 |
ttcaagaattg |
128 |
Q |
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| T |
7490904 |
ttcaagaattg |
7490894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 7484120 - 7484014
Alignment:
| Q |
124 |
aattggtgctattctaaaacttggagattcttctattgctacaagttcaagctcaaacacaaacaagaaaaatgtcgtggctactacttctgcaatgaat |
223 |
Q |
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| T |
7484120 |
aattggtgctattctaaaacttggtgattcttctactgccacaagttcaagctcaaacacaaacaagaaaaatgttgtggctactacttctgcaatggat |
7484021 |
T |
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| Q |
224 |
aatgata |
230 |
Q |
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|||||| |
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| T |
7484020 |
gatgata |
7484014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 7484236 - 7484141
Alignment:
| Q |
32 |
ttacacccttcactttttaacttcagaaataatattgaggcaagtaatactgaagtaggaactctaggttttggtggagcaagtacttcaagaatt |
127 |
Q |
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| T |
7484236 |
ttacacccttcactttttaatttgagaaataatattgaggctagtaatactggtgtaggaactctaggttttggtggagcaagtacttcaagaatt |
7484141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 7484012 - 7483980
Alignment:
| Q |
244 |
aaagtcaaacattgaagaagaaccctccgattt |
276 |
Q |
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| T |
7484012 |
aaagtcaaacattgaagaagaaccctccaattt |
7483980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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