View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4579-Insertion-1 (Length: 1061)

Name: NF4579-Insertion-1
Description: NF4579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4579-Insertion-1
NF4579-Insertion-1
[»] chr4 (2 HSPs)
chr4 (253-1061)||(53853607-53854425)
chr4 (8-188)||(53853363-53853542)


Alignment Details
Target: chr4 (Bit Score: 643; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 253 - 1061
Target Start/End: Original strand, 53853607 - 53854425
Alignment:
Q  253 agcagaaaaatatacagcatgcgttattggaatttggtagataaggcagctgacaaagactttatagtatgtccaaatttttgtttataaccttatcctt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53853607 agcagaaaaatatacagcatgcgttattggaatttggtagataaggcagctgacaaagactttatagtatgtccaaatttttgtttataaccttatcctt 53853706  T
Q  353 gat---------------tcaaaagcacaacacacatattgacaacattcatcatttgtagttatcactaagttgacaaataattaaaataagcagcctc 437  Q
    |||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53853707 gatgagaagcaatatatttcaaaagcacaacacacatattgacaacattcatcatttgtagttatcactaagttgacaaataattaaaataagcagcctc 53853806  T
Q  438 aagtgtgcaacatgatcttcattattgtattatactcctatttcaaattggttgcatcaataaataactaattaattttctcatccttctttgtactgca 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53853807 aagtgtgcaacatgatcttcattattgtattatactcctatttcaaattggttgcatcaataaataactaattaattttctcatccttctttgtactgca 53853906  T
Q  538 caaattaaaaaatgaccataacctctatctcaaatatttttaaaagtggattccagttgtgaagaaaagcatcaatgatctttttggatatgtgtccaat 637  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53853907 caaattaaaaaatgaccataacctctatctcaaatatttttaaaagtggattccagttgtgaagaaaagcatcaatgatctttttggatatgtgtccaat 53854006  T
Q  638 taacagctaggttgctttcctccctcgttatgaattttctagagttgtaaacattatcctcttcttcaaacccaactacctggtctggaatatattactg 737  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53854007 taacagctaggttgctttcctccctcgttatgaattttctagagttgtaaacattatcctcttcttcaaacccaactacctggtctggaatatattactg 53854106  T
Q  738 ccttcataaataaatacannnnnnnnnncttccttattttcattcttatttaatatataattttgaaaaatgtcaattgaatcttttatcttgatttaag 837  Q
    ||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  53854107 ccttcataaataaataca-tttctttttcttccttattttcattcttatttaatatataattttgaaaaatgtcaattgaatcttttatcttgattttag 53854205  T
Q  838 atattaatgtagtcatgatttaataagatgaaataaattatttttacgtagaatatttttatcattttttcggacgaagtgacaaacacaattcgaaact 937  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  53854206 atattaatgtagtcatgattt-ataagatgaaataaatta-ttttacgtagaata-ttttatcattttttcagacgaagtgacaaacacaattcgaaact 53854302  T
Q  938 catataataaccatgaaggttctggaatttcagcccgaataaatgatatc-actaaacaatattaacattatcagttgagttaaaatttataaacacaaa 1036  Q
    ||||  ||||||||| |||||||||  ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53854303 cata-cataaccatg-aggttctgg-gtttcaacccgaataaatgatatcaactaaacaatattaacattatcagttgagttaaaacttataaacacaaa 53854399  T
Q  1037 tttata--ttgagtatccgtaaataat 1061  Q
    ||||||  |||||||| ||||||||||    
T  53854400 tttataatttgagtat-cgtaaataat 53854425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 4e-75
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 53853363 - 53853542
Alignment:
Q  8 aaacaaacttttgaagattaagaaggttggaatattcaaaagtataaagcatttcccccannnnnnncttgataatattaattaacctaacctatctttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  53853363 aaacaaacttttgaagattaagaaggttggaatattcaaaagtataaagcatttcccccatttttttcttgataatattaattaacctaacctatctttc 53853462  T
Q  108 tctctttcctctcgattttttaccaaagaatattattccctaactaatctagggctttttggacataatatagatcagtca 188  Q
    ||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53853463 tctctttcctcacgattttataccaaagaatattatt-cctaactaatctagggctttttggacataatatagatcagtca 53853542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University