View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4579-Insertion-2 (Length: 1007)
Name: NF4579-Insertion-2
Description: NF4579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4579-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 886; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 886; E-Value: 0
Query Start/End: Original strand, 10 - 980
Target Start/End: Complemental strand, 44996373 - 44995412
Alignment:
| Q |
10 |
ttggtgtctgacacaagtgattacatttacatttaattagttctataatttaaaattgttaacacttaacacgatctatatgtcagtgttgtgttccagt |
109 |
Q |
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| T |
44996373 |
ttggtatctgacacaagtgattacatttacatttaattagttctataatttaaaattgttaacac-------ggtctatatgtcagtgttgtgttccagt |
44996281 |
T |
|
| Q |
110 |
actcgtgtttgtgtctataaatgcaatgaaatgaagtactaacactatatatggttaatctaggtttgactgaaacttgtgggtcaactactcttgcatt |
209 |
Q |
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| T |
44996280 |
actcgtttttgtgtctataaatgcaatgaaatgaagtactaacattatatatggttaatctaggtttgactgaaacttgtgggtcaactactcttgcatt |
44996181 |
T |
|
| Q |
210 |
tcctgatgaaatgtgcatgcttggtaccgttggtcctgtatctatatacaacgaaatacaactagaagaagttccagagatgggttacaatcctcttgga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44996180 |
tcctgatgaaatgtgcatgcttggtaccgttggtcctgtatctatatacaacgaaatacaactagaagaagttccagagatgggttacaatcctcttgga |
44996081 |
T |
|
| Q |
310 |
aatccttcatgtggtgagatatgtcttagagggaaatcagttttctctggctaccacaaaaaccctgagttaacaaaggaatccatagtagatggatggt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44996080 |
aatccttcatgtggtgagatatgtcttagagggaaatcagttttctctggctaccacaaaaaccctgagttaacaaaggaatccatagtagatggatggt |
44995981 |
T |
|
| Q |
410 |
ttcacacaggttgaattgaaatttaatcttccaccctcaaacttttgttttgaagattttattgaatgatttaatttgattgtgacattgtttggcatct |
509 |
Q |
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| T |
44995980 |
ttcacacaggttgaattgaaatttaatcttccaccctcaaacttttgttttgaagattttattgaatgatttaatttgattgtgacattgtttggcatct |
44995881 |
T |
|
| Q |
510 |
tcaggggacataggagaaatgcaacctaatggtgttgttaagattattgatagggaaaagaatctcataaaactttcccaaggagagtatattgcacttg |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44995880 |
tcaggggacataggagaaatgcaacctaatggtgttgttaagattattgataggaaaaagaatctcataaaactttcccaaggagagtatattgcacttg |
44995781 |
T |
|
| Q |
610 |
agtatttggaaaatgtttatggaatcacgccaatagtagaagatgtaagcataaaattcagtattgttcattcatatggttttaaagtgcagctgtggtt |
709 |
Q |
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| T |
44995780 |
agtatttggaaaatgtttatggaatcacgccaatagtagaagatgtaagcataaaattcagtattgttcgttcatatggttttaaagtgcagctgtggtt |
44995681 |
T |
|
| Q |
710 |
atgctatgaccctatatactgtcgaaaaatgcagctaatgcgatcaaaattgtcgttgtgatacttcatagactttaaaattattcatatttaggctctt |
809 |
Q |
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| T |
44995680 |
atgctatgaccctatatactgtcgaaaaatgcagctaatgcgatcaaaattgtcgttgtgatactgcatagactttaaaattattcatatttaggctctt |
44995581 |
T |
|
| Q |
810 |
gataggtatgtatgtgactattgttgtgttttcgtgtaaggtttggggtttatgggaatagcttcaagtctgtgctagttgcagtagtagttccaaatg- |
908 |
Q |
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| T |
44995580 |
gataggtatgtatgtgactattgttgtgttttcgtgtaaggttt-gggtttatgggaatagcttcaagtctgtgctagttgcagtagtagttccaaatga |
44995482 |
T |
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| Q |
909 |
agaaatccaccaagaaatgggcatacacaaatgggtttcgtgggttctttctctgaactttgctctcttgac |
980 |
Q |
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| T |
44995481 |
agaaat-caccaagaaatgggcatacacaaat-ggtttcgtgggttctttctctgaactttgctctcttgac |
44995412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 2e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 162 - 426
Target Start/End: Original strand, 38768020 - 38768284
Alignment:
| Q |
162 |
ggttaatctaggtttgactgaaacttgtgggtcaactactcttgcatttcctgatgaaatgtgcatgcttggtaccgttggtcctgtatctatatacaac |
261 |
Q |
| |
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|||||||| ||||||||| ||||| ||||| ||||||||||| ||||||| ||||||||||||||||| |||| |||||| |||| || ||| ||| |
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| T |
38768020 |
ggttaatccaggtttgacagaaacatgtggaccaactactcttacatttccagatgaaatgtgcatgctaggtaatgttggtgttgtaactgtattcaat |
38768119 |
T |
|
| Q |
262 |
gaaatacaactagaagaagttccagagatgggttacaatcctcttggaaatccttcatgtggtgagatatgtcttagagggaaatcagttttctctggct |
361 |
Q |
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||| | | || || ||||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||| | ||||| ||| |||||| |||| | |
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| T |
38768120 |
gaattgcggctggaggaagttccagacatgggttacaatcctcttggaactccgccatgtggagagatatgtgtcagaggcaaaagtgttttcactggtt |
38768219 |
T |
|
| Q |
362 |
accacaaaaaccctgagttaacaaaggaatccatagtagatggatggtttcacacaggttgaatt |
426 |
Q |
| |
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|||| || || |||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |
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| T |
38768220 |
accataagaatcctgagttaacaaaagaagccataatagatggatggtttcacacaggttgaatt |
38768284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 510 - 658
Target Start/End: Original strand, 38768492 - 38768640
Alignment:
| Q |
510 |
tcaggggacataggagaaatgcaacctaatggtgttgttaagattattgatagggaaaagaatctcataaaactttcccaaggagagtatattgcacttg |
609 |
Q |
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|||||||||||||||||||||| ||||||||| || | | ||||||||| ||| | |||||||| | || ||||| |||||||||||||| ||||||| |
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| T |
38768492 |
tcaggggacataggagaaatgcttcctaatggtattataaggattattgacaggaagaagaatcttgttaagctttctcaaggagagtatatagcacttg |
38768591 |
T |
|
| Q |
610 |
agtatttggaaaatgtttatggaatcacgccaatagtagaagatgtaag |
658 |
Q |
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||||| | |||||||||||| |||||| || ||||| ||||||||||| |
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| T |
38768592 |
agtatcttgaaaatgtttatacaatcactcctatagttgaagatgtaag |
38768640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 855 - 909
Target Start/End: Original strand, 38768728 - 38768782
Alignment:
| Q |
855 |
gggtttatgggaatagcttcaagtctgtgctagttgcagtagtagttccaaatga |
909 |
Q |
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|||| |||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
38768728 |
gggtatatgggaatagcttcaagtcaatgctggttgcagtagtagttccaaatga |
38768782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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