View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4579-Insertion-3 (Length: 830)

Name: NF4579-Insertion-3
Description: NF4579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4579-Insertion-3
NF4579-Insertion-3
[»] chr4 (16 HSPs)
chr4 (8-335)||(5035696-5036023)
chr4 (518-824)||(5036092-5036400)
chr4 (71-180)||(2525894-2526003)
chr4 (94-180)||(2536651-2536737)
chr4 (557-638)||(12447313-12447394)
chr4 (122-174)||(2625296-2625348)
chr4 (109-180)||(2491249-2491320)
chr4 (558-653)||(35382531-35382627)
chr4 (579-659)||(2396162-2396242)
chr4 (562-636)||(23607230-23607306)
chr4 (122-181)||(2467679-2467738)
chr4 (557-612)||(28909519-28909574)
chr4 (675-732)||(2528738-2528796)
chr4 (281-314)||(2536860-2536893)
chr4 (120-181)||(5101944-5102005)
chr4 (780-821)||(29821361-29821402)
[»] chr2 (5 HSPs)
chr2 (557-653)||(11921804-11921901)
chr2 (557-659)||(30465115-30465218)
chr2 (779-821)||(1355977-1356019)
chr2 (779-812)||(5095806-5095839)
chr2 (564-637)||(34374926-34374999)
[»] chr8 (4 HSPs)
chr8 (557-659)||(5978682-5978785)
chr8 (565-641)||(31226639-31226716)
chr8 (557-587)||(23982172-23982202)
chr8 (564-653)||(28540531-28540621)
[»] chr7 (3 HSPs)
chr7 (575-659)||(46748209-46748294)
chr7 (566-653)||(36901213-36901301)
chr7 (557-658)||(43302287-43302388)
[»] chr1 (9 HSPs)
chr1 (557-598)||(32851937-32851978)
chr1 (564-660)||(36297837-36297934)
chr1 (566-659)||(36166746-36166840)
chr1 (561-659)||(40287156-40287254)
chr1 (557-637)||(47783820-47783901)
chr1 (789-823)||(36774852-36774886)
chr1 (570-659)||(43822648-43822738)
chr1 (567-639)||(24555942-24556015)
chr1 (557-657)||(27544228-27544329)
[»] chr6 (3 HSPs)
chr6 (566-653)||(21941107-21941195)
chr6 (566-653)||(31103582-31103669)
chr6 (781-821)||(28606479-28606519)
[»] chr3 (7 HSPs)
chr3 (777-821)||(48342300-48342344)
chr3 (779-823)||(53299810-53299854)
chr3 (562-636)||(35539439-35539514)
chr3 (779-821)||(26960922-26960964)
chr3 (563-653)||(30595234-30595325)
chr3 (783-821)||(26960849-26960887)
chr3 (599-641)||(43584358-43584400)
[»] chr5 (1 HSPs)
chr5 (564-653)||(4432212-4432301)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 5035696 - 5036023
Alignment:
Q  8 tgtgattggcatatcttgttctgagacgtgatagagagactttattctgcgggggtgatcggcaaaacctagattcccattaggacgaagaaggttgaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5035696 tgtgattggcatatcttgttctgagacgtgatagagagactttattctgcgggggtgatcggcaaaacctagattcccattaggacgaagaagtttgaat 5035795  T
Q  108 gtgttgttctcctcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttgcttctgtttctgttcccatttttcgtt 207  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5035796 gtgttgttctcctcgtcgttgaggaatttgaagatgttttcccataaatcctctggtaaatttgaacgtgttgcttctgtttctgttcccatttttcgtt 5035895  T
Q  208 tcttagggttttcctctgttgctgctattttctctgcttcctctgccgccatgttttgaaccacgaagagaaggaagaacaagatggaatggaacatgga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5035896 tcttagggttttcctctgttgctgctattttctctgcttcctctgccgccatgttttgaaccacgaagagaaggaagaacaagatggaatggaacttgga 5035995  T
Q  308 agaaagaatactttcggttagagcatcc 335  Q
    ||||||||||||| ||||||||| ||||    
T  5035996 agaaagaatacttacggttagagtatcc 5036023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 518 - 824
Target Start/End: Original strand, 5036092 - 5036400
Alignment:
Q  518 gagagtcccgcttaaaattgagg-tcttaattaagaccccgaccccgggtcttataagaccctgaaaaagactctccccaatgaggtatctaatagatat 616  Q
    ||||||||||||||||||||||| ||||||||||||||||       ||||||||||||| |||||||||||||||||||||| |||| ||||||| |||    
T  5036092 gagagtcccgcttaaaattgagggtcttaattaagaccccc------ggtcttataagactctgaaaaagactctccccaatggggtacctaatagctat 5036185  T
Q  617 tgtgtcttaaatggttaagaccctctcattgaagatgatcttaccactttcttaaattttattagtacgggtaataattta-ggccacagtggcccttta 715  Q
    || |||||||||||||||||||||  ||||||||||| |||||||||||| |||||| |||||||||| |||||||||||| | ||||||||||||||||    
T  5036186 tgggtcttaaatggttaagacccttccattgaagatggtcttaccactttattaaatcttattagtacaggtaataatttacgcccacagtggcccttta 5036285  T
Q  716 accaaagcaaggg----taaaatgtg--aaattctcgtgtagcatttgggtgacatttgggtgctaaatattggccaaccacaatgtcacaaatgtataa 809  Q
    |||||||||||||    |||||||||  ||||||||| ||||||||||||||||||| |||||  ||| ||||| ||||||||||||||||| |||||||    
T  5036286 accaaagcaagggtaaataaaatgtgaaaaattctcgggtagcatttgggtgacattggggtgtcaaacattggtcaaccacaatgtcacaagtgtataa 5036385  T
Q  810 aaagacaaaaaatca 824  Q
    |||||||||||||||    
T  5036386 aaagacaaaaaatca 5036400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 2525894 - 2526003
Alignment:
Q  71 aaaacctagattcccattaggacgaagaaggttgaatgtgttgttctcctcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaattt 170  Q
    |||||||| |||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |    
T  2525894 aaaacctatattcccatcaagacgaagaaggttgaaggtgttgttgtcctcgtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatat 2525993  T
Q  171 gaacgtgttg 180  Q
    ||||||||||    
T  2525994 gaacgtgttg 2526003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 2536651 - 2536737
Alignment:
Q  94 gaagaaggttgaatgtgttgttctcctcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttg 180  Q
    |||||||| |||| |||||| | ||||||| |||||| |||||||| |||| ||||||||| ||||||||||||| |||||||||||    
T  2536651 gaagaaggctgaaggtgttgctgtcctcgtggttgagaaatttgaagatgtattcccataactcctctggtaaatatgaacgtgttg 2536737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 557 - 638
Target Start/End: Complemental strand, 12447394 - 12447313
Alignment:
Q  557 gaccccgggtcttataagaccctgaaaaagactctccccaatgaggtatctaatagatattgtgtcttaaatggttaagacc 638  Q
    |||||||||||||||||||| || ||||||| ||||| ||||| |||| |||||||||| || ||||||| |||||||||||    
T  12447394 gaccccgggtcttataagacactaaaaaagattctcctcaatggggtacctaatagatagtgggtcttaactggttaagacc 12447313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 2625348 - 2625296
Alignment:
Q  122 gtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaac 174  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  2625348 gtcgttgaggaatttgaagatgtgttcccataactcctctggtaaatctgaac 2625296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 2491249 - 2491320
Alignment:
Q  109 tgttgttctcctcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttg 180  Q
    ||||||| ||||||||||| ||||||||||  |||||||||||||| | ||||||||||  |||||||||||    
T  2491249 tgttgttgtcctcgtcgttcaggaatttgaggatgtgttcccataacttctctggtaaacatgaacgtgttg 2491320  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 653
Target Start/End: Original strand, 35382531 - 35382627
Alignment:
Q  558 accccgggtcttataagaccctgaaaaagactctccccaat-gaggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatg 653  Q
    |||| ||||||||||||||||||||||||| | |||||| | | |||  ||||||| || || ||||||||| |||||||||||| || ||||||||    
T  35382531 accctgggtcttataagaccctgaaaaagattatccccattaggggtgcctaatagttactgggtcttaaatagttaagaccctcccaatgaagatg 35382627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 579 - 659
Target Start/End: Complemental strand, 2396242 - 2396162
Alignment:
Q  579 tgaaaaagactctccccaatgaggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatgatctta 659  Q
    ||||||||| | ||| ||||| | |||||||||| ||  | ||||||||||||||||| |||| ||||||||||| |||||    
T  2396242 tgaaaaagattatcctcaatgggatatctaataggtaccgggtcttaaatggttaagaacctcccattgaagatggtctta 2396162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 562 - 636
Target Start/End: Complemental strand, 23607306 - 23607230
Alignment:
Q  562 cgggtcttataagaccctgaaaaagactctccccaat-gaggtat-ctaatagatattgtgtcttaaatggttaaga 636  Q
    |||||||||| ||||||||||||||| ||||| |||| ||| ||| ||||||| ||| | |||||||||||||||||    
T  23607306 cgggtcttatgagaccctgaaaaagattctccacaatggagatatcctaataggtatcgggtcttaaatggttaaga 23607230  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 2467679 - 2467738
Alignment:
Q  122 gtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttgc 181  Q
    |||||||||||||||||| ||| | |||||||| |||| |||||||| ||||| ||||||    
T  2467679 gtcgttgaggaatttgaagatgcgctcccataactcctttggtaaatatgaacatgttgc 2467738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 612
Target Start/End: Original strand, 28909519 - 28909574
Alignment:
Q  557 gaccccgggtcttataagaccctgaaaaagactctccccaatgaggtatctaatag 612  Q
    |||||||||||||||||||| |||||||||| ||||| || || | ||||||||||    
T  28909519 gaccccgggtcttataagactctgaaaaagattctcctcattgggatatctaatag 28909574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 675 - 732
Target Start/End: Original strand, 2528738 - 2528796
Alignment:
Q  675 ttattagtacgggtaataatttaggcc-acagtggccctttaaccaaagcaagggtaaa 732  Q
    |||||| || || |||||||||||||| | |||||||||||||||||||||||| ||||    
T  2528738 ttattattatggttaataatttaggcccatagtggccctttaaccaaagcaaggctaaa 2528796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 281 - 314
Target Start/End: Original strand, 2536860 - 2536893
Alignment:
Q  281 gaagaacaagatggaatggaacatggaagaaaga 314  Q
    |||||||||||||||||||||| |||||||||||    
T  2536860 gaagaacaagatggaatggaacttggaagaaaga 2536893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 5102005 - 5101944
Alignment:
Q  120 tcgtcgttgaggaatttgaaaatgtgttcccataaatcctctggtaaatttgaacgtgttgc 181  Q
    |||||||||||||||||||| ||| | |||||||| || || ||||||| ||||| ||||||    
T  5102005 tcgtcgttgaggaatttgaagatgcgctcccataactcatccggtaaatatgaacctgttgc 5101944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 780 - 821
Target Start/End: Original strand, 29821361 - 29821402
Alignment:
Q  780 ttggccaaccacaatgtcacaaatgtataaaaagacaaaaaa 821  Q
    |||||||||||||||||||||| |||| ||||||| ||||||    
T  29821361 ttggccaaccacaatgtcacaagtgtacaaaaagataaaaaa 29821402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 557 - 653
Target Start/End: Complemental strand, 11921901 - 11921804
Alignment:
Q  557 gaccccgggtcttataagaccctgaaaaagactctccccaat-gaggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatg 653  Q
    ||||||||||||||||||||||| ||||||  |||||||||| |||||| ||||||| ||| | |||||||||| ||||||||||| ||||| |||||    
T  11921901 gaccccgggtcttataagaccctaaaaaagtttctccccaatggaggtacctaataggtatcgggtcttaaatgtttaagaccctcccattggagatg 11921804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 557 - 659
Target Start/End: Complemental strand, 30465218 - 30465115
Alignment:
Q  557 gaccccgggtcttataagaccctgaaaaagactctccccaatg-aggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatgat 655  Q
    |||| |||||||||||| ||| ||||||||| ||||| ||||| || || |||||| ||| || ||||||||| ||||||||| ||  |||||||||| |    
T  30465218 gacctcgggtcttataaaaccttgaaaaagattctccacaatgaagatacctaataaatactgagtcttaaatagttaagaccttccaattgaagatggt 30465119  T
Q  656 ctta 659  Q
    ||||    
T  30465118 ctta 30465115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 779 - 821
Target Start/End: Complemental strand, 1356019 - 1355977
Alignment:
Q  779 attggccaaccacaatgtcacaaatgtataaaaagacaaaaaa 821  Q
    ||||||||||||||||||||||| |||| |||| |||||||||    
T  1356019 attggccaaccacaatgtcacaagtgtacaaaatgacaaaaaa 1355977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 779 - 812
Target Start/End: Complemental strand, 5095839 - 5095806
Alignment:
Q  779 attggccaaccacaatgtcacaaatgtataaaaa 812  Q
    |||||||||||||||||||||||||||| |||||    
T  5095839 attggccaaccacaatgtcacaaatgtacaaaaa 5095806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 637
Target Start/End: Complemental strand, 34374999 - 34374926
Alignment:
Q  564 ggtcttataagaccctgaaaaagactctccccaatgaggtatctaatagatattgtgtcttaaatggttaagac 637  Q
    |||||||||||||||||||||||| ||| ||||  | |||| ||||||| ||  |  |||||||||||||||||    
T  34374999 ggtcttataagaccctgaaaaagattcttcccatgggggtacctaataggtaccgaatcttaaatggttaagac 34374926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 557 - 659
Target Start/End: Original strand, 5978682 - 5978785
Alignment:
Q  557 gaccccgggtcttataagaccctgaaaaagactctccccaatga-ggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatgat 655  Q
    ||||||| ||||||||||||||||||||||| |||||||| ||| |||| ||||||| ||    ||||||||| ||||||||||||||| || ||||| |    
T  5978682 gaccccgagtcttataagaccctgaaaaagattctccccattgagggtacctaataggtaccaggtcttaaatagttaagaccctctcaatggagatggt 5978781  T
Q  656 ctta 659  Q
    ||||    
T  5978782 ctta 5978785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 565 - 641
Target Start/End: Original strand, 31226639 - 31226716
Alignment:
Q  565 gtcttataagaccctgaaaaagactctccccaat-gaggtatctaatagatattgtgtcttaaatggttaagaccctc 641  Q
    ||||||||||||||| ||||||| |||||||| | |||||||||||||| || || ||||||||| ||||||||||||    
T  31226639 gtcttataagaccctaaaaaagattctccccatttgaggtatctaataggtactgggtcttaaatagttaagaccctc 31226716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 587
Target Start/End: Complemental strand, 23982202 - 23982172
Alignment:
Q  557 gaccccgggtcttataagaccctgaaaaaga 587  Q
    |||||||||||||||||||||||||||||||    
T  23982202 gaccccgggtcttataagaccctgaaaaaga 23982172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 564 - 653
Target Start/End: Complemental strand, 28540621 - 28540531
Alignment:
Q  564 ggtcttataagaccctgaaaaagactctccccaatga-ggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatg 653  Q
    ||||||||||||||| ||||||   |||||||||||| |||| ||||||| |||   |||||||||| | ||||||||| ||||| |||||    
T  28540621 ggtcttataagaccccgaaaaaacttctccccaatgagggtaactaataggtatcaggtcttaaatgttgaagaccctcccattgtagatg 28540531  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 575 - 659
Target Start/End: Original strand, 46748209 - 46748294
Alignment:
Q  575 accctgaaaaagactctccccaatgag-gtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatgatctta 659  Q
    |||||||| |||| ||||||||||| | ||| ||||||||||    ||||||||||||||||| |||| |||||||||||||||||    
T  46748209 accctgaagaagattctccccaatgggagtacctaatagataccaggtcttaaatggttaagatcctcccattgaagatgatctta 46748294  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 566 - 653
Target Start/End: Original strand, 36901213 - 36901301
Alignment:
Q  566 tcttataagaccctgaaaaagactctccccaatg-aggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatg 653  Q
    |||||||||||||||||||||| | ||||| ||| ||||| |||| || ||    |||||||||||||||||| ||| |||||||||||    
T  36901213 tcttataagaccctgaaaaagattatccccgatggaggtacctaaaaggtacgaagtcttaaatggttaagactctcccattgaagatg 36901301  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 658
Target Start/End: Original strand, 43302287 - 43302388
Alignment:
Q  557 gaccccgggtcttataagaccctgaaaaagactctccccaatgaggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatgatc 656  Q
    |||||| |||||||||||||| |||||||   |||||||   |||||| ||||||| || |  ||||||||| ||||||| |||| || |||||||| ||    
T  43302287 gaccccaggtcttataagaccttgaaaaaagttctccccttggaggtacctaatagttactaggtcttaaatagttaagatcctcccaatgaagatggtc 43302386  T
Q  657 tt 658  Q
    ||    
T  43302387 tt 43302388  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 557 - 598
Target Start/End: Original strand, 32851937 - 32851978
Alignment:
Q  557 gaccccgggtcttataagaccctgaaaaagactctccccaat 598  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  32851937 gaccccgggtcttataagaccctgaaaaagattctccccaat 32851978  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 564 - 660
Target Start/End: Complemental strand, 36297934 - 36297837
Alignment:
Q  564 ggtcttataagaccctgaaaaagactctccccaat-gaggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatgatcttac 660  Q
    |||||||  ||||||||||||| |||||||||||| |||||| ||||||||||  |  | |||||| ||||||||||| | |||| ||||||||||||    
T  36297934 ggtcttaggagaccctgaaaaatactctccccaatggaggtacctaatagataccggattttaaatagttaagacccttttattggagatgatcttac 36297837  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 659
Target Start/End: Complemental strand, 36166840 - 36166746
Alignment:
Q  566 tcttataagaccctgaaaaagactctccccaatg-aggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatgatctta 659  Q
    |||||||||||| ||||||| | |  |||||||| ||||| ||||||| ||  | |||||||||| |||||||||||||||| |||||| |||||    
T  36166840 tcttataagaccttgaaaaaaattgaccccaatggaggtacctaataggtaccgagtcttaaatgtttaagaccctctcattaaagatggtctta 36166746  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 561 - 659
Target Start/End: Original strand, 40287156 - 40287254
Alignment:
Q  561 ccgggtcttataagaccctgaaaaagactctccccaatgaggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatgatctta 659  Q
    ||||||||||||||||||||||||| | ||||||| ||||| || ||||||  ||  | |||||||||| ||||||| ||  | ||||||||| |||||    
T  40287156 ccgggtcttataagaccctgaaaaatattctccccgatgagatacctaatacgtaccgggtcttaaatgtttaagactcttccgttgaagatggtctta 40287254  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 637
Target Start/End: Original strand, 47783820 - 47783901
Alignment:
Q  557 gaccccgggtcttataagaccctgaaaaagactctccccaatgaggtatc-taatagatattgtgtcttaaatggttaagac 637  Q
    ||||||||||||||||||||||||||||||| | |||||| || ||  || |||||| || || ||||||||| ||||||||    
T  47783820 gaccccgggtcttataagaccctgaaaaagattttccccattgggggttcttaataggtactgggtcttaaatagttaagac 47783901  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 789 - 823
Target Start/End: Original strand, 36774852 - 36774886
Alignment:
Q  789 cacaatgtcacaaatgtataaaaagacaaaaaatc 823  Q
    ||||||||||||| |||||||||||||||||||||    
T  36774852 cacaatgtcacaagtgtataaaaagacaaaaaatc 36774886  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 570 - 659
Target Start/End: Complemental strand, 43822738 - 43822648
Alignment:
Q  570 ataagaccctgaaaaagactctccccaat-gaggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatgatctta 659  Q
    |||||||||||||||||| |||||||||| | |||| ||||||| ||  | ||||||||||  |||||||||  ||||| ||||| |||||    
T  43822738 ataagaccctgaaaaagattctccccaatgggggtacctaataggtaccgggtcttaaatgtctaagacccttccattggagatggtctta 43822648  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 639
Target Start/End: Original strand, 24555942 - 24556015
Alignment:
Q  567 cttataagaccctgaaaaagactctccccaat-gaggtatctaatagatattgtgtcttaaatggttaagaccc 639  Q
    ||||||||||||||||||||| |||||||| | | |||| ||||||| ||  | ||||||||| ||||||||||    
T  24555942 cttataagaccctgaaaaagattctccccattaggggtacctaataggtaacgggtcttaaatagttaagaccc 24556015  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 657
Target Start/End: Complemental strand, 27544329 - 27544228
Alignment:
Q  557 gaccccgggtcttataagaccctgaaaaagactctccccaatgagg-tatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatgat 655  Q
    ||||||| ||||||||| ||| ||||||||  |||||| |||| || || ||||||||||| | ||||||||||  | ||||| || ||||| |||||||    
T  27544329 gaccccgagtcttataaaaccttgaaaaagtttctcccaaatgggggtacctaatagatatcgggtcttaaatgtcttagaccatcccattggagatgat 27544230  T
Q  656 ct 657  Q
    ||    
T  27544229 ct 27544228  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 566 - 653
Target Start/End: Original strand, 21941107 - 21941195
Alignment:
Q  566 tcttataagaccctgaaaaagactctccccaatg-aggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatg 653  Q
    |||||||||||||||||||| | |||| |||||| ||||| |||||| ||||   |||||||||| ||||||||||| ||||| |||||    
T  21941107 tcttataagaccctgaaaaaaattctcaccaatggaggtacctaataaatatcaggtcttaaatgtttaagaccctcccattggagatg 21941195  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 566 - 653
Target Start/End: Original strand, 31103582 - 31103669
Alignment:
Q  566 tcttataagaccctgaaaaagactctccccaatgaggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatg 653  Q
    |||||||||||  | ||||||| |||| ||||| | ||| ||||||||||  | |||||||||||||||||||||  |||||||||||    
T  31103582 tcttataagactttaaaaaagattctctccaataaagtacctaatagataacgggtcttaaatggttaagacccttccattgaagatg 31103669  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 781 - 821
Target Start/End: Original strand, 28606479 - 28606519
Alignment:
Q  781 tggccaaccacaatgtcacaaatgtataaaaagacaaaaaa 821  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  28606479 tggccaaccacaatgtcacaagtgtacaaaaagacaaaaaa 28606519  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 777 - 821
Target Start/End: Complemental strand, 48342344 - 48342300
Alignment:
Q  777 atattggccaaccacaatgtcacaaatgtataaaaagacaaaaaa 821  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||    
T  48342344 atattggccaaccacaatgtcacaaatgtacaaaaaaacaaaaaa 48342300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 779 - 823
Target Start/End: Complemental strand, 53299854 - 53299810
Alignment:
Q  779 attggccaaccacaatgtcacaaatgtataaaaagacaaaaaatc 823  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||    
T  53299854 attggccaaccacaatgtcacaagtgtacaaaaagacaaaaaatc 53299810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 562 - 636
Target Start/End: Complemental strand, 35539514 - 35539439
Alignment:
Q  562 cgggtcttataagaccctgaaaaagactctccccaat-gaggtatctaatagatattgtgtcttaaatggttaaga 636  Q
    |||||||||||||||||||||||||| ||||  || | |||||| ||||||||||  | |||||||||||||||||    
T  35539514 cgggtcttataagaccctgaaaaagattctctacattggaggtacctaatagataccgggtcttaaatggttaaga 35539439  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 779 - 821
Target Start/End: Complemental strand, 26960964 - 26960922
Alignment:
Q  779 attggccaaccacaatgtcacaaatgtataaaaagacaaaaaa 821  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  26960964 attggccaaccacaatgtcacaagtgtagaaaaagacaaaaaa 26960922  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 653
Target Start/End: Original strand, 30595234 - 30595325
Alignment:
Q  563 gggtcttataagaccctgaaaaagactctccccaatgagg-tatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatg 653  Q
    ||||||||||||| ||| ||||||| ||||| ||||| || || ||||||| ||    |||||||||||||||||||||| ||||| |||||    
T  30595234 gggtcttataagatcctaaaaaagattctcctcaatgggggtacctaataggtacaaggtcttaaatggttaagaccctcacattggagatg 30595325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 783 - 821
Target Start/End: Original strand, 26960849 - 26960887
Alignment:
Q  783 gccaaccacaatgtcacaaatgtataaaaagacaaaaaa 821  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  26960849 gccaaccacaatgtcacaagtgtacaaaaagacaaaaaa 26960887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 599 - 641
Target Start/End: Complemental strand, 43584400 - 43584358
Alignment:
Q  599 gaggtatctaatagatattgtgtcttaaatggttaagaccctc 641  Q
    |||||| |||||||||||||||||||||||| || ||||||||    
T  43584400 gaggtacctaatagatattgtgtcttaaatgtttgagaccctc 43584358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 653
Target Start/End: Complemental strand, 4432301 - 4432212
Alignment:
Q  564 ggtcttataagaccctgaaaaagactctccccaatgaggtatctaatagatattgtgtcttaaatggttaagaccctctcattgaagatg 653  Q
    |||||||||||||| | ||||||| |||| |||| | |||| ||||||| ||  | ||||||||||||||||| | || ||||| |||||    
T  4432301 ggtcttataagacctttaaaaagattctctccaacggggtacctaataggtaccgagtcttaaatggttaagatcatcccattggagatg 4432212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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