View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4579_high_2 (Length: 238)

Name: NF4579_high_2
Description: NF4579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4579_high_2
NF4579_high_2
[»] chr4 (14 HSPs)
chr4 (17-236)||(5035482-5035701)
chr4 (16-178)||(2525675-2525837)
chr4 (29-184)||(2491040-2491195)
chr4 (30-184)||(2486219-2486373)
chr4 (34-117)||(2536564-2536647)
chr4 (50-184)||(2519145-2519279)
chr4 (111-178)||(2534233-2534300)
chr4 (29-156)||(2467470-2467597)
chr4 (39-174)||(2621163-2621298)
chr4 (53-179)||(2477485-2477611)
chr4 (39-92)||(2367678-2367731)
chr4 (53-103)||(5106330-5106380)
chr4 (38-92)||(6007669-6007723)
chr4 (53-89)||(12121013-12121049)
[»] chr7 (2 HSPs)
chr7 (56-153)||(2576415-2576512)
chr7 (38-86)||(15091356-15091404)
[»] chr5 (3 HSPs)
chr5 (56-92)||(32268774-32268810)
chr5 (38-92)||(41900257-41900311)
chr5 (44-89)||(12846943-12846988)
[»] chr1 (3 HSPs)
chr1 (56-92)||(15837982-15838018)
chr1 (38-92)||(33161437-33161491)
chr1 (39-80)||(7555449-7555490)
[»] chr8 (1 HSPs)
chr8 (44-92)||(32152210-32152258)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 5035701 - 5035482
Alignment:
Q  17 atcacaaacggtagtttcaggtctctttccctcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctccgaggcaacaa 116  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5035701 atcacaaacagtagtttcaggtctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaa 5035602  T
Q  117 tccctttccttaatcgtctctttgaaaggttccctaatattacatcactcaatatcactctcacttccaatgcgtggtcccgagaagccgacctcggcaa 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||| |    
T  5035601 tccctttccttagtcgtctctttgaaaggttccctaatattacatcactcaatatcactctcacttccaatgcctggtcccgagaagctcacctcggcga 5035502  T
Q  217 gtttctagccaaaatctccg 236  Q
    ||||||||| ||||||||||    
T  5035501 gtttctagcgaaaatctccg 5035482  T

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Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 2525837 - 2525675
Alignment:
Q  16 catcacaaacggtagtttcaggtctctttccctcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctccgaggcaaca 115  Q
    |||||| |||||||||||||| ||||| |||||||| |||||||||||||| |||||||||||| |||||||||||||||||| ||||||| | |||||     
T  2525837 catcaccaacggtagtttcagatctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattcttggtcacaatctccaatgcaact 2525738  T
Q  116 atccctttccttaatcgtctctttgaaaggttccctaatattacatcactcaatatcactctc 178  Q
    |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  2525737 atcccttttcttaatcgtctctttgaaaggttccctaacattgcatcactcaatatcactctc 2525675  T

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Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 2491195 - 2491040
Alignment:
Q  29 agtttcaggtctctttccctcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctccgaggcaacaatccctttcctta 128  Q
    |||||||||||||| || ||||| |||||||||||||| |||||||| |||||||| ||||| | ||||| ||||||||| |||||||||||||||||||    
T  2491195 agtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttcctta 2491096  T
Q  129 atcgtctctttgaaaggttccctaatattacatcactcaatatcactctcacttcc 184  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||| ||| |||||    
T  2491095 atcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctcttcc 2491040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 2486373 - 2486219
Alignment:
Q  30 gtttcaggtctctttccctcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctccgaggcaacaatccctttccttaa 129  Q
    |||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||||  |||||||||||||||| |    
T  2486373 gttttaggtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttca 2486274  T
Q  130 tcgtctctttgaaaggttccctaatattacatcactcaatatcactctcacttcc 184  Q
    |||||||||| |  ||||||||||| ||||||| | ||||||||||||| |||||    
T  2486273 tcgtctcttttatgggttccctaatgttacatcccacaatatcactctctcttcc 2486219  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 2536647 - 2536564
Alignment:
Q  34 caggtctctttccctcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctccgaggcaacaat 117  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2536647 caggtctctctccctcatttcaaaacagtttctgtccatcaccaaccttcttcgattcttggtcaaaatctccgaggcaacaat 2536564  T

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Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 2519279 - 2519145
Alignment:
Q  50 gtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctccgaggcaacaatccctttccttaatcgtctctttgaaaggttcc 149  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||  |||| |||||| ||   |||||||||||||||| ||||||||||||| |||||||    
T  2519279 gtttcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttcc 2519180  T
Q  150 ctaatattacatcactcaatatcactctcacttcc 184  Q
    | ||  ||||||||||||| ||||||||| |||||    
T  2519179 ccaacgttacatcactcaacatcactctctcttcc 2519145  T

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Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 2534300 - 2534233
Alignment:
Q  111 caacaatccctttccttaatcgtctctttgaaaggttccctaatattacatcactcaatatcactctc 178  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  2534300 caacaatccctttccttaaccgcctctttgaaaggttccctaatattacatcactcaatatcactctc 2534233  T

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Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 2467597 - 2467470
Alignment:
Q  29 agtttcaggtctctttccctcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctccgaggcaacaatccctttcctta 128  Q
    ||||||| |||||| ||| |||| |||||||||||| | ||||| |||||| ||||||||||||  |||   || ||||| | |||||||||||| |||     
T  2467597 agtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttc 2467498  T
Q  129 atcgtctctttgaaaggttccctaatat 156  Q
    |||||||||||||||||||||| |||||    
T  2467497 atcgtctctttgaaaggttccccaatat 2467470  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 2621163 - 2621298
Alignment:
Q  39 ctctttccctcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctccgaggcaacaatccctttccttaatcgtctctt 138  Q
    |||| |||||||| || ||||||||| | ||||||||||||||||| || ||||   ||| |||||||||   ||| ||||||||| ||  ||| |||||    
T  2621163 ctctctccctcgtatccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 2621262  T
Q  139 tgaaaggttccctaatattacatcactcaatatcac 174  Q
     || |||||||||||||| ||||| ||||| |||||    
T  2621263 cgacaggttccctaatatcacatccctcaacatcac 2621298  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 2477611 - 2477485
Alignment:
Q  53 tcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctccgaggcaacaatccctttccttaatcgtctctttgaaaggttcccta 152  Q
    |||||| ||||||| ||||| |||||| ||||||||||||  || | ||| |||||   ||| ||||||| |||| ||| ||||||| ||||||||||||    
T  2477611 tcaaaagagtttctgtccataaccaacagtcttcgattctctgtgacaatttccgatcaaaccatcccttcccttcatcctctctttcaaaggttcccta 2477512  T
Q  153 atattacatcactcaatatcactctca 179  Q
    |  | ||||| || || ||||||||||    
T  2477511 acgtcacatccctaaacatcactctca 2477485  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 2367678 - 2367731
Alignment:
Q  39 ctctttccctcgtttcaaaacagtttctctccatcaccaaccgtcttcgattct 92  Q
    |||||||| |||| || ||||| ||||||||||||||||||||||| |||||||    
T  2367678 ctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattct 2367731  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 5106330 - 5106380
Alignment:
Q  53 tcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatc 103  Q
    |||||||||||| | |||||||||||||||| |||||||| ||||| ||||    
T  5106330 tcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatc 5106380  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 6007723 - 6007669
Alignment:
Q  38 tctctttccctcgtttcaaaacagtttctctccatcaccaaccgtcttcgattct 92  Q
    ||||| |||||||| || |||||||| ||||||||||||||| |||| |||||||    
T  6007723 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattct 6007669  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 12121013 - 12121049
Alignment:
Q  53 tcaaaacagtttctctccatcaccaaccgtcttcgat 89  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  12121013 tcaaagcagttcctctccatcaccaaccgtcttcgat 12121049  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 2576415 - 2576512
Alignment:
Q  56 aaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctccgaggcaacaatccctttccttaatcgtctctttgaaaggttccctaa 153  Q
    ||||||||| | ||||||||||| ||||||||||||| ||||| |||| ||||   ||| ||||||||| ||  ||| ||||| |||||| |||||||    
T  2576415 aaacagtttttatccatcaccaatcgtcttcgattctcggtcacaatcaccgattgaaccatccctttcatttgtcgcctcttcgaaaggatccctaa 2576512  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 15091356 - 15091404
Alignment:
Q  38 tctctttccctcgtttcaaaacagtttctctccatcaccaaccgtcttc 86  Q
    ||||| |||||||| || |||||||| ||||||||||||||| ||||||    
T  15091356 tctctctccctcgtctccaaacagttcctctccatcaccaacagtcttc 15091404  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 32268810 - 32268774
Alignment:
Q  56 aaacagtttctctccatcaccaaccgtcttcgattct 92  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32268810 aaacagttactctccatcaccaaccgtcttcgattct 32268774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 41900257 - 41900311
Alignment:
Q  38 tctctttccctcgtttcaaaacagtttctctccatcaccaaccgtcttcgattct 92  Q
    ||||| || ||||| || ||||||||||||||||||||||||  |||||||||||    
T  41900257 tctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattct 41900311  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 12846988 - 12846943
Alignment:
Q  44 tccctcgtttcaaaacagtttctctccatcaccaaccgtcttcgat 89  Q
    ||||||||||| || ||||| |||||||||||||||||||| ||||    
T  12846988 tccctcgtttccaagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 15837982 - 15838018
Alignment:
Q  56 aaacagtttctctccatcaccaaccgtcttcgattct 92  Q
    ||||||||||||||||||||||||||||| |||||||    
T  15837982 aaacagtttctctccatcaccaaccgtctccgattct 15838018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 33161491 - 33161437
Alignment:
Q  38 tctctttccctcgtttcaaaacagtttctctccatcaccaaccgtcttcgattct 92  Q
    ||||| |||||||| || |||||||||||||||||||| ||  ||||||||||||    
T  33161491 tctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattct 33161437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 7555490 - 7555449
Alignment:
Q  39 ctctttccctcgtttcaaaacagtttctctccatcaccaacc 80  Q
    |||| ||||||||||| |||||||||||||| ||||||||||    
T  7555490 ctctctccctcgtttccaaacagtttctctctatcaccaacc 7555449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 32152258 - 32152210
Alignment:
Q  44 tccctcgtttcaaaacagtttctctccatcaccaaccgtcttcgattct 92  Q
    |||||||| || |||||||| ||||||||||||||| |||| |||||||    
T  32152258 tccctcgtctccaaacagttcctctccatcaccaacagtctccgattct 32152210  T

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