View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4579_high_3 (Length: 207)
Name: NF4579_high_3
Description: NF4579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4579_high_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 41718360 - 41718154
Alignment:
| Q |
1 |
tataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaa |
100 |
Q |
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| T |
41718360 |
tataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaa |
41718261 |
T |
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| Q |
101 |
tctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacat |
200 |
Q |
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| T |
41718260 |
tctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacat |
41718161 |
T |
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| Q |
201 |
gttcaca |
207 |
Q |
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| T |
41718160 |
gttcaca |
41718154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 41723086 - 41722880
Alignment:
| Q |
1 |
tataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaa |
100 |
Q |
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| T |
41723086 |
tataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaa |
41722987 |
T |
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| Q |
101 |
tctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacat |
200 |
Q |
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| T |
41722986 |
tctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacat |
41722887 |
T |
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| Q |
201 |
gttcaca |
207 |
Q |
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| T |
41722886 |
gttcaca |
41722880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 48781360 - 48781266
Alignment:
| Q |
64 |
gccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaa--gcccttttgtcaaacatgtattactgccatgtgaaaa |
157 |
Q |
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| T |
48781360 |
gccaaccaatttatgttgaaaatatatgcaccaaaaatataaatgttaaat-gcaaaaagccctttcgtcaaacaccttttactgccatgtgaaaa |
48781266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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