View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4579_low_1 (Length: 645)
Name: NF4579_low_1
Description: NF4579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4579_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 633
Target Start/End: Original strand, 47501541 - 47502166
Alignment:
| Q |
19 |
ttacttgggagaatgaacattcgtgcatggatgttgtttgtgccactttgggttacattctcgtacactgttgttgcctttagtatttggtgtcctgatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47501541 |
ttacttgggagaatgaacattcgtgcatggatgttgtttgtgccactttgggttacattctcgtacactgttgttgcctttagtatttggtgtcctgatg |
47501640 |
T |
|
| Q |
119 |
gttggttggctaaacgtggggttattgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggtgcgtgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47501641 |
gttggttggctaaacgtggggttattgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgg----gtgc |
47501736 |
T |
|
| Q |
219 |
gtgtattatcttcatatatatttgcttgttttttcaatgtcatctaatttgagaccttattgcccaataaaagtacactatgaaataaatatctcagcgg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47501737 |
gtgtattatcttcatatatatttgcttgttttttcaatgtcatctaatttgagaccttattgcccaataaaagtacaatatgaaataaatatctcagcga |
47501836 |
T |
|
| Q |
319 |
gaactaattaaattatttaaatttgggttgttggatcaagattgagtgacccgtatttcaaaccgagtagtgttatatataaaag--------ttta--- |
407 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
47501837 |
gaac----taaattatttaaatttgggttgttggatcaagattgagtgacccgtatttcaaaccgagtagtgttatatatagcaggacacttatttacta |
47501932 |
T |
|
| Q |
408 |
----tgatctacatcatttcaactaatttgacctaaaagtttatgaagttcgtccacccagatccaaaccctagtaaaaagaagaaaatactactaatat |
503 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47501933 |
atattgatctacataatttcaactaatttgacctaaaagtttatgaagttcgtccacccagatccaaaccctagtaaaaagaagaaaatactgctaatat |
47502032 |
T |
|
| Q |
504 |
tggcgtttnnnnnnnnnnnnnnnnnnngataatatgggtggttatagact----tgtgttattttaaagtttcaaaatcaacaagtacttaaattgatta |
599 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47502033 |
tggcgtttaaaaaaatgaaaaagaaaagataatatgggtgcttatagacttgtgtgtgttattttaaagtttcaaaatcaacaagtacttaaattgatta |
47502132 |
T |
|
| Q |
600 |
atttttaaagactgactttttgcatgtgatgatg |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
47502133 |
atttttaaagactgactttttgcatgtgatgatg |
47502166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 25670994 - 25670924
Alignment:
| Q |
142 |
attgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggt |
212 |
Q |
| |
|
||||||| | |||| || ||||||||||| || ||| |||| |||||||||| ||||||||||||||||| |
|
|
| T |
25670994 |
attgattattctggtggttatgttattcatctttcttctggaattgctggtttcactgctgcttattgggt |
25670924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 31606165 - 31606235
Alignment:
| Q |
142 |
attgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggt |
212 |
Q |
| |
|
||||||| ||| ||||| | ||| ||||| || ||| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
31606165 |
attgattatgccggggggtttgtaattcatctatcttctggtgttgcaggtttcactgctgcttattgggt |
31606235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University