View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4580_high_3 (Length: 259)
Name: NF4580_high_3
Description: NF4580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4580_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 2083218 - 2083466
Alignment:
| Q |
1 |
tgtgtatcattttaacttaatctcatatttaatatcttaaatatgaagtcttgttaaccaatgtcataagagcattgttaaagaatgtatgaatgcaaat |
100 |
Q |
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| T |
2083218 |
tgtgtatcattttaacttaatctcatatttattatcttaaatatgaagtcttgctaacgaatgtcataagagcattgttaaagaatgcatgaatgtaaat |
2083317 |
T |
|
| Q |
101 |
tttgtctcgaaaatacaagtaaaataatttttaaagtaataattacatcattatttatacaaaggttacnnnnnnnnattctttaaacaatgctctcaag |
200 |
Q |
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| T |
2083318 |
tttgtttcgaaaatacaagtaaaataatttttaaagtaataattacatcattatttatacaaaggttacttcttttgattctttaaacaatgctctcaag |
2083417 |
T |
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| Q |
201 |
acatttattagcatttttcttaaatatatagataaactttgattctctg |
249 |
Q |
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| T |
2083418 |
acatttattagcatttttcttaaatatatagataaactttgattctctg |
2083466 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 23070707 - 23070756
Alignment:
| Q |
97 |
aaattttgtctcgaaaatacaagtaaaataatttttaaagtaataattac |
146 |
Q |
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| T |
23070707 |
aaattttgtcttaaaaatacaagtcaaatatttttcaaagtaataattac |
23070756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 32259710 - 32259649
Alignment:
| Q |
97 |
aaattttgtctcgaaaatacaagtaaaataatttttaaagtaataattacatcattatttat |
158 |
Q |
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| T |
32259710 |
aaattttgtgttgaaaatacaagtcatatacttcttaaagcaataatgacatcattatttat |
32259649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 33440805 - 33440845
Alignment:
| Q |
122 |
aaataatttttaaagtaataattacatcattatttatacaa |
162 |
Q |
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| T |
33440805 |
aaatacttttcaaagtattaattacatcattatttatacaa |
33440845 |
T |
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