View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4580_low_1 (Length: 340)
Name: NF4580_low_1
Description: NF4580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4580_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 340
Target Start/End: Original strand, 32762769 - 32763102
Alignment:
| Q |
7 |
ggaaattcatcaaactcatcaacaacaggacttgtttattttccactatatgcattagagatgcatgaacaaaagagttacatggatttggctgatccaa |
106 |
Q |
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| T |
32762769 |
ggaaattcatcaaactcatcaacaacaggacttgtttattttccactatatgcattagagatgcatgaacaaaagagttacatggatttggctgatccaa |
32762868 |
T |
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| Q |
107 |
ggttagaaggacgtgttacaatcgatgaagtggagaaactcgttcgtattgcattgtgttgtgttcatgaagatccatcacttaggcctaacatggttac |
206 |
Q |
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| T |
32762869 |
ggttagaaggacgtgttacaatcgatgaagtggagaaactcgttcgtattgcattgtgttgtgttcatgaagatccatcacttaggcctaacatggttac |
32762968 |
T |
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| Q |
207 |
tgttgttggaatgttagaaggtgggactccattgccacaacctaggatggaatctttgaatttcttgaggttctatggtcgtaggttttctgaggcttct |
306 |
Q |
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| T |
32762969 |
tgttgttggaatgttagaaggtgggactccattgccacaacctaggatggaatctttgaatttcttgaggttctatggtcgtaggttttctgaggcttct |
32763068 |
T |
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| Q |
307 |
gttatagcagaagagaatgaatatggttctgtga |
340 |
Q |
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| T |
32763069 |
gttatagcagaagagaatgaacatggttctgtga |
32763102 |
T |
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