View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4580_low_2 (Length: 285)
Name: NF4580_low_2
Description: NF4580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4580_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 47686844 - 47686577
Alignment:
| Q |
1 |
ataaaatgctcatgtttaatggtacaataaaactcagttaattatagaggaactagcttataaattgtgtgcatattttaagaaacaataaaaatgctnn |
100 |
Q |
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| T |
47686844 |
ataaaatgctcatgtttaatggtacaataaaactcagttaattatagaggaactagcttataaattgtgtgcatattttaagaaacaataaaaatgctaa |
47686745 |
T |
|
| Q |
101 |
nnnnnnttgttttccttatttccagaaattatgtatcattcttaagtagcatttcatcttctaacaatcacaatgattcatttaaaaaatctcccaattt |
200 |
Q |
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| T |
47686744 |
aaaaaattgttttccttatttccagaaattatgtatcattcttaagtagcatttcatcttctaacaatcacaatgattcatttaaaaaatctcacaattt |
47686645 |
T |
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| Q |
201 |
tttattgagaggacatctcacattttttattaacaaaatataaaataaacatattttagaaactaaat |
268 |
Q |
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| T |
47686644 |
tttatttagaggacatctcacattttttattaacaaaatataaaataaacatattttagaaactaaat |
47686577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 47692825 - 47692767
Alignment:
| Q |
135 |
atcattcttaagtagcatttcatcttctaacaatcacaatgattcatttaaaaaatctc |
193 |
Q |
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| T |
47692825 |
atcattcttaagtagcatttcatcttttaatcatcaaaatgattcattttaaaaatctc |
47692767 |
T |
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