View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4580_low_5 (Length: 242)
Name: NF4580_low_5
Description: NF4580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4580_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 54774664 - 54774454
Alignment:
| Q |
17 |
atgaatctttgaatcccttctgatatgcagtttcttcttgtttgattgttttctcctcaaccccggataaagcttttattgtgtatctgccaacaccatt |
116 |
Q |
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| T |
54774664 |
atgaatctttgaatcccttctgatatgcagtttcttcttgtttgattgttttctcctcaaccccggataaagcttttattgtgtatctgccaacaccatt |
54774565 |
T |
|
| Q |
117 |
ttgagccatctaattcatccaaggaaatataattagcttattgtttttctttgctttattnnnnnnnnntattatgtcacaaaggaaattcatcattttg |
216 |
Q |
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| T |
54774564 |
ttgagccatctaatccatccaaggaaatataattaccttattgtttttctttgctttattaaaaaaaaaaattatgtcacaaacgaaattcatcattttg |
54774465 |
T |
|
| Q |
217 |
acaacaaaact |
227 |
Q |
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||||||||||| |
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| T |
54774464 |
acaacaaaact |
54774454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 5328510 - 5328296
Alignment:
| Q |
17 |
atgaatctttgaatcccttctgatatgcagtttcttcttgtttgattgttttctcctcaaccccggataaagcttt----tattgtgtatctgccaacac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5328510 |
atgaatctttgaatcccttctgatatgcagtttcttcttgtttgattgttttctcctcaaccccggataaagcttttatatattgtgtatctgccaacac |
5328411 |
T |
|
| Q |
113 |
cattttgagccatctaattcatccaaggaaatataattagcttattgtttttctttgctttattnnnnnnnnntattatgtcacaaaggaaattcatcat |
212 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
5328410 |
cattttgagccatctaatccatccaaggaaatataattaccttattgtttttctttgctttattaaaaaaaaaaattatgtcacaaacgaaattcatcat |
5328311 |
T |
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| Q |
213 |
tttgacaacaaaact |
227 |
Q |
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||||||||||||||| |
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| T |
5328310 |
tttgacaacaaaact |
5328296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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