View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4581-Insertion-11 (Length: 299)

Name: NF4581-Insertion-11
Description: NF4581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4581-Insertion-11
NF4581-Insertion-11
[»] chr2 (1 HSPs)
chr2 (8-298)||(22148983-22149274)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 22148983 - 22149274
Alignment:
Q  8 gctttatgctgtgaaaagctgaaaaacaagtttgaagagctaaatggatttaactttgagcta-aagtttatataatgatggaagccctaagattgggtt 106  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22148983 gctttatgttgttaaaagctgaaaaacaagtttgaagagctaaatggatttaactttgagctataagtttatataatgatggaagccctaagattgggtt 22149082  T
Q  107 aaacctcttttcttgtattgtacacccaaataaatatatgtaatctttctaatgatttcattatggaaatctggatttgattcctggtgattctacatga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22149083 aaacctcttttcttgtattgtacacccaaataaatatatgtaatctttctaatgatttcattatggaaatctggatttgattcctggtgattctacatga 22149182  T
Q  207 tcatattttagttaggaaaagattatctggtgtattctgttgatatttttcagcgggtcttgcctaaatggaaaccattgaaagtattgtgt 298  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22149183 tcatattttagtttggaaaagattatctggtgtattctgttgatatttttcagcgggtcttgcctaaatggaaaccattgaaattattgtgt 22149274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University