View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4581-Insertion-12 (Length: 279)

Name: NF4581-Insertion-12
Description: NF4581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4581-Insertion-12
NF4581-Insertion-12
[»] chr3 (7 HSPs)
chr3 (13-279)||(3779119-3779388)
chr3 (7-125)||(3792088-3792206)
chr3 (7-125)||(3829892-3830011)
chr3 (162-244)||(3829799-3829881)
chr3 (162-244)||(3791995-3792077)
chr3 (13-153)||(16994994-16995130)
chr3 (130-170)||(31283876-31283916)
[»] scaffold0267 (2 HSPs)
scaffold0267 (7-125)||(5581-5699)
scaffold0267 (162-244)||(5488-5570)
[»] chr1 (1 HSPs)
chr1 (12-125)||(17617318-17617431)
[»] chr2 (2 HSPs)
chr2 (40-124)||(34150595-34150680)
chr2 (130-170)||(25886164-25886204)
[»] chr8 (7 HSPs)
chr8 (90-155)||(13909740-13909804)
chr8 (130-170)||(21316867-21316907)
chr8 (130-176)||(17970584-17970630)
chr8 (12-54)||(42972406-42972448)
chr8 (130-170)||(17510988-17511028)
chr8 (130-170)||(25227343-25227383)
chr8 (130-170)||(29765364-29765404)
[»] chr5 (2 HSPs)
chr5 (14-86)||(17034154-17034227)
chr5 (27-67)||(36076586-36076626)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 3779119 - 3779388
Alignment:
Q  13 ctcaattgaaaacgatacaaaatgtctcttaaaccatgaacagcttctctaaaatcctctataatgacttaattt---atctactaaactaactcaaaat 109  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  3779119 ctcaattgaaaacgatacaaaatgtctcttaaaccatgaacaacttctctaaaatcctctataatgacttaattttttatctactaaactaactcaaaat 3779218  T
Q  110 catactgaaaataacgatgcatgacctgtcatcacaacctcaaactaaaattattgcttgtacttgatcatatttatttcaagtacattacctattccaa 209  Q
     ||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  3779219 tatactaaaaataacgttgcatgacctgtcatcataacctcaaacttaaattatcgcttgtacttgatcatatttatttcaagtacattaccgattccaa 3779318  T
Q  210 atccaattgttgctgctgttctatttcttcctgttgctgcggtttacgagtgactattgccgtgccttcc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3779319 atccaattgttgctgctgttctatttcttcctgttgctgcggtttacgagtgactattgccgtgccttcc 3779388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 3792206 - 3792088
Alignment:
Q  7 atataactcaattgaaaacgatacaaaatgtctcttaaaccatgaacagcttctctaaaatcctctataatgacttaatttatctactaaactaactcaa 106  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||| | ||||||| ||||||||||||||||||    
T  3792206 atatgactcaatttaaaacgatacaaaatgtctcttaaaccatgaacaatttctctaaaattctctataataatttaatttgtctactaaactaactcaa 3792107  T
Q  107 aatcatactgaaaataacg 125  Q
    |||||||||||||||||||    
T  3792106 aatcatactgaaaataacg 3792088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 3830011 - 3829892
Alignment:
Q  7 atataactcaattgaaaacgatacaaaa-tgtctcttaaaccatgaacagcttctctaaaatcctctataatgacttaatttatctactaaactaactca 105  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |  ||||||||||||||||||||||||||||||| |||| |||||||| |||    
T  3830011 atatgactcaattgaaaacgatacaaaaatgtctcttaaaccatgaataatttctctaaaatcctctataatgacttaatttgtctattaaactaagtca 3829912  T
Q  106 aaatcatactgaaaataacg 125  Q
    ||||||||||||||||||||    
T  3829911 aaatcatactgaaaataacg 3829892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 3829881 - 3829799
Alignment:
Q  162 attgcttgtacttgatcatatttatttcaagtacattacctattccaaatccaattgttgctgctgttctatttcttcctgtt 244  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  3829881 attgcttgtacttgatcatatttatttcaattacattaccaattccaaatccaattattgctgctgttctatttcttcctgtt 3829799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 3792077 - 3791995
Alignment:
Q  162 attgcttgtacttgatcatatttatttcaagtacattacctattccaaatccaattgttgctgctgttctatttcttcctgtt 244  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  3792077 attgcttgtacttgatcatatttatttcaattacgttaccaattccaaatccaattattgctgctgttctatttcttcctgtt 3791995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 16995130 - 16994994
Alignment:
Q  13 ctcaattgaaaacgatacaaaatgtctcttaaaccatgaacagcttctcta-aaatcctctataatgacttaatttatctactaaactaactcaaaatca 111  Q
    ||||||||||||| ||| ||||||||||||||||||||  ||  ||||||| || |||| |||||||||| || || |||| |||||||||||||||  |    
T  16995130 ctcaattgaaaacaatataaaatgtctcttaaaccatg--caatttctctataactcctttataatgactcaa-ttgtctaataaactaactcaaaa--a 16995036  T
Q  112 tactgaaaataacgatgcatgacctgtcatcacaacctcaaa 153  Q
     | ||||||||| |    ||||||||||| ||||||||||||    
T  16995035 caatgaaaataaagtaaaatgacctgtcaacacaacctcaaa 16994994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 31283916 - 31283876
Alignment:
Q  130 atgacctgtcatcacaacctcaaactaaaattattgcttgt 170  Q
    ||||||||||||||||||| |||||| ||| ||||||||||    
T  31283916 atgacctgtcatcacaaccccaaacttaaactattgcttgt 31283876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 5699 - 5581
Alignment:
Q  7 atataactcaattgaaaacgatacaaaatgtctcttaaaccatgaacagcttctctaaaatcctctataatgacttaatttatctactaaactaactcaa 106  Q
    |||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  5699 atatgactcaattgaaaacgatacaaaatgtctcttaaaccataaatagtttctctaaaatcctctataatgtcttaatttgtctactaaactaagtcaa 5600  T
Q  107 aatcatactgaaaataacg 125  Q
    ||||||||||| |||||||    
T  5599 aatcatactgacaataacg 5581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 5570 - 5488
Alignment:
Q  162 attgcttgtacttgatcatatttatttcaagtacattacctattccaaatccaattgttgctgctgttctatttcttcctgtt 244  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  5570 attgcttgtacttgatcatatttatttcaattacattaccaattccaaatccaattattgctgctgttctatttcttcctgtt 5488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 17617431 - 17617318
Alignment:
Q  12 actcaattgaaaacgatacaaaatgtctcttaaaccatgaacagcttctctaaaa-tcctctataatgacttaatttatctactaaactaactcaaaatc 110  Q
    |||||||||||||| |||| ||| | | ||||||||||||  |  |||||||||| ||||||||||||||| ||||  ||||||||||| ||| |||| |    
T  17617431 actcaattgaaaacaatactaaaaggcccttaaaccatgagaaaattctctaaaactcctctataatgactaaattg-tctactaaacttactaaaaaac 17617333  T
Q  111 atactgaaaataacg 125  Q
    ||| |||||||||||    
T  17617332 atattgaaaataacg 17617318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 34150680 - 34150595
Alignment:
Q  40 cttaaaccatgaacagcttctctaaaa-tcctctataatgacttaatttatctactaaactaactcaaaatcatactgaaaataac 124  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||  | || ||||| ||||| |||||||| |||||| ||||||||    
T  34150680 cttaaaccatgaacaacttttctaaaactcctctataatgactacaattgtctaccaaactgactcaaaaacatactaaaaataac 34150595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 25886204 - 25886164
Alignment:
Q  130 atgacctgtcatcacaacctcaaactaaaattattgcttgt 170  Q
    ||||||||||||||||||| |||||| ||||| ||||||||    
T  25886204 atgacctgtcatcacaaccccaaacttaaattgttgcttgt 25886164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 13909740 - 13909804
Alignment:
Q  90 ctactaaactaactcaaaatcatactgaaaataacgatgcatgacctgtcatcacaacctcaaact 155  Q
    |||||||||| |||||||| |||||| |||||||||| | | ||||||| ||||||||||||||||    
T  13909740 ctactaaactgactcaaaaacatactaaaaataacgaag-acgacctgttatcacaacctcaaact 13909804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 21316867 - 21316907
Alignment:
Q  130 atgacctgtcatcacaacctcaaactaaaattattgcttgt 170  Q
    |||||||||||||||||||||||||| ||||| ||||||||    
T  21316867 atgacctgtcatcacaacctcaaacttaaattgttgcttgt 21316907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 17970584 - 17970630
Alignment:
Q  130 atgacctgtcatcacaacctcaaactaaaattattgcttgtacttga 176  Q
    ||||||||||||||||||| |||||| ||||| |||||||| |||||    
T  17970584 atgacctgtcatcacaaccccaaacttaaattgttgcttgtccttga 17970630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 42972448 - 42972406
Alignment:
Q  12 actcaattgaaaacgatacaaaatgtctcttaaaccatgaaca 54  Q
    |||||||||||||| ||||||||||||  ||||||||||||||    
T  42972448 actcaattgaaaacaatacaaaatgtcctttaaaccatgaaca 42972406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 17510988 - 17511028
Alignment:
Q  130 atgacctgtcatcacaacctcaaactaaaattattgcttgt 170  Q
    ||||||| |||||||||||||||||| ||| ||||||||||    
T  17510988 atgacctatcatcacaacctcaaacttaaactattgcttgt 17511028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 25227343 - 25227383
Alignment:
Q  130 atgacctgtcatcacaacctcaaactaaaattattgcttgt 170  Q
    ||||||||||||||||||| |||||| ||||| ||||||||    
T  25227343 atgacctgtcatcacaaccccaaacttaaattgttgcttgt 25227383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 29765404 - 29765364
Alignment:
Q  130 atgacctgtcatcacaacctcaaactaaaattattgcttgt 170  Q
    ||||||||||||||||||| |||||| ||||| ||||||||    
T  29765404 atgacctgtcatcacaaccccaaacttaaattgttgcttgt 29765364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 17034154 - 17034227
Alignment:
Q  14 tcaattgaaaacgatacaaaatgtctcttaaaccatgaacagcttctct-aaaatcctctataatgacttaatt 86  Q
    ||||||| |||  |||||||||||| ||||||||||||  | ||| ||| ||||||||||||||||||| ||||    
T  17034154 tcaattgtaaaaaatacaaaatgtcccttaaaccatgattaacttatctaaaaatcctctataatgactcaatt 17034227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 36076586 - 36076626
Alignment:
Q  27 atacaaaatgtctcttaaaccatgaacagcttctctaaaat 67  Q
    ||||||||| ||||||||||||||| || ||||||||||||    
T  36076586 atacaaaatttctcttaaaccatgagcaacttctctaaaat 36076626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University