View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4581-Insertion-2 (Length: 1050)

Name: NF4581-Insertion-2
Description: NF4581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4581-Insertion-2
NF4581-Insertion-2
[»] chr4 (47 HSPs)
chr4 (616-1044)||(6373379-6373809)
chr4 (359-489)||(11241558-11241688)
chr4 (359-473)||(3930348-3930462)
chr4 (518-620)||(6373255-6373357)
chr4 (359-473)||(13198676-13198790)
chr4 (369-473)||(16555695-16555799)
chr4 (370-482)||(5206138-5206250)
chr4 (359-473)||(22681652-22681765)
chr4 (370-476)||(35393545-35393651)
chr4 (53-120)||(6373125-6373192)
chr4 (366-451)||(8488278-8488363)
chr4 (368-457)||(27304894-27304983)
chr4 (191-294)||(3930179-3930284)
chr4 (191-294)||(11241389-11241494)
chr4 (191-294)||(13198854-13198960)
chr4 (191-244)||(3930480-3930533)
chr4 (368-425)||(49178636-49178693)
chr4 (191-245)||(8488188-8488243)
chr4 (191-293)||(35393726-35393829)
chr4 (191-244)||(16555515-16555569)
chr4 (192-244)||(22681576-22681628)
chr4 (191-292)||(54508815-54508918)
chr4 (191-241)||(7603422-7603472)
chr4 (191-244)||(16555817-16555871)
chr4 (191-244)||(24775783-24775837)
chr4 (191-244)||(36095817-36095871)
chr4 (368-417)||(16555818-16555866)
chr4 (192-244)||(43292038-43292091)
chr4 (195-294)||(49178763-49178866)
chr4 (192-244)||(7603146-7603197)
chr4 (191-242)||(22681881-22681933)
chr4 (194-243)||(54509116-54509167)
chr4 (255-294)||(3844431-3844470)
chr4 (205-244)||(27304731-27304770)
chr4 (205-294)||(39415239-39415330)
chr4 (191-244)||(169439-169493)
chr4 (191-244)||(293217-293271)
chr4 (191-244)||(5205988-5206042)
chr4 (191-244)||(18077202-18077256)
chr4 (191-244)||(43051252-43051306)
chr4 (191-244)||(50678779-50678833)
chr4 (191-244)||(56505693-56505747)
chr4 (191-243)||(5206231-5206283)
chr4 (368-417)||(8181996-8182045)
chr4 (191-244)||(11241661-11241714)
chr4 (368-417)||(16555520-16555568)
chr4 (194-242)||(47219203-47219252)
[»] scaffold0802 (3 HSPs)
scaffold0802 (359-473)||(1288-1402)
scaffold0802 (191-294)||(1118-1224)
scaffold0802 (191-244)||(1420-1474)
[»] chr8 (54 HSPs)
chr8 (359-473)||(15156053-15156167)
chr8 (359-473)||(12281196-12281310)
chr8 (369-473)||(37752186-37752290)
chr8 (359-473)||(765806-765920)
chr8 (359-475)||(43162405-43162521)
chr8 (369-473)||(43245943-43246047)
chr8 (359-473)||(34313932-34314046)
chr8 (359-473)||(41662271-41662385)
chr8 (369-472)||(16929013-16929115)
chr8 (368-457)||(18019875-18019964)
chr8 (370-473)||(74864-74967)
chr8 (368-480)||(7127828-7127940)
chr8 (362-442)||(9465675-9465755)
chr8 (191-294)||(34313765-34313868)
chr8 (191-294)||(15155883-15155989)
chr8 (368-457)||(37670132-37670221)
chr8 (191-294)||(18020037-18020140)
chr8 (368-441)||(33748161-33748236)
chr8 (194-244)||(9465874-9465923)
chr8 (191-294)||(12281374-12281480)
chr8 (191-294)||(41662107-41662213)
chr8 (191-294)||(16929191-16929296)
chr8 (191-294)||(37752365-37752470)
chr8 (191-294)||(43162234-43162341)
chr8 (255-294)||(765983-766022)
chr8 (191-244)||(43245871-43245925)
chr8 (191-294)||(33747984-33748089)
chr8 (194-281)||(9930550-9930633)
chr8 (191-240)||(3307338-3307388)
chr8 (191-244)||(15156185-15156239)
chr8 (191-244)||(22851390-22851444)
chr8 (194-244)||(25439126-25439176)
chr8 (193-294)||(74688-74789)
chr8 (191-244)||(3463642-3463694)
chr8 (191-240)||(6092777-6092825)
chr8 (191-244)||(13936723-13936776)
chr8 (195-244)||(43162539-43162588)
chr8 (378-443)||(43597892-43597957)
chr8 (206-243)||(43598756-43598793)
chr8 (191-230)||(767720-767759)
chr8 (209-244)||(16928961-16928996)
chr8 (366-425)||(22786930-22786989)
chr8 (198-240)||(7127660-7127702)
chr8 (194-243)||(7127923-7127973)
chr8 (191-244)||(9822748-9822802)
chr8 (191-244)||(9823361-9823415)
chr8 (191-241)||(11007563-11007613)
chr8 (191-244)||(23123338-23123392)
chr8 (256-294)||(37670021-37670059)
chr8 (191-244)||(37752084-37752138)
chr8 (191-244)||(39724048-39724102)
chr8 (191-244)||(41662403-41662457)
chr8 (191-244)||(43246176-43246230)
chr8 (368-417)||(12281427-12281475)
[»] chr1 (31 HSPs)
chr1 (359-489)||(8108890-8109020)
chr1 (359-476)||(17518472-17518588)
chr1 (359-473)||(41082980-41083094)
chr1 (359-473)||(47955378-47955492)
chr1 (369-473)||(22149580-22149683)
chr1 (194-294)||(8108724-8108826)
chr1 (191-294)||(17518303-17518408)
chr1 (191-294)||(47955556-47955662)
chr1 (191-294)||(31848142-31848246)
chr1 (191-244)||(13589659-13589712)
chr1 (191-244)||(41083211-41083264)
chr1 (191-294)||(22149403-22149506)
chr1 (191-278)||(1176717-1176804)
chr1 (193-244)||(17518602-17518653)
chr1 (191-244)||(20480168-20480221)
chr1 (191-244)||(50615621-50615674)
chr1 (191-244)||(50623449-50623502)
chr1 (371-473)||(31847966-31848067)
chr1 (438-489)||(48190798-48190848)
chr1 (191-244)||(6002237-6002291)
chr1 (191-244)||(8108993-8109047)
chr1 (191-244)||(39692000-39692054)
chr1 (256-294)||(41083158-41083196)
chr1 (191-244)||(47955306-47955360)
chr1 (191-244)||(48190771-48190825)
chr1 (191-244)||(49284409-49284463)
chr1 (191-244)||(20371353-20371406)
chr1 (209-242)||(22149701-22149734)
chr1 (454-491)||(24671281-24671318)
chr1 (191-244)||(27172116-27172169)
chr1 (191-240)||(49318447-49318496)
[»] chr2 (44 HSPs)
chr2 (359-476)||(6171325-6171442)
chr2 (359-473)||(20347332-20347446)
chr2 (359-473)||(30190995-30191109)
chr2 (359-473)||(32673011-32673125)
chr2 (369-476)||(11883692-11883799)
chr2 (366-473)||(26737655-26737763)
chr2 (369-473)||(40469607-40469711)
chr2 (367-447)||(15920911-15920991)
chr2 (368-442)||(40221489-40221563)
chr2 (368-473)||(17345803-17345908)
chr2 (191-294)||(20347163-20347268)
chr2 (191-294)||(6171156-6171261)
chr2 (191-294)||(30191173-30191279)
chr2 (191-294)||(32672842-32672948)
chr2 (211-294)||(15920799-15920883)
chr2 (194-244)||(32673143-32673193)
chr2 (191-294)||(40469427-40469533)
chr2 (191-242)||(17346037-17346088)
chr2 (438-489)||(18296670-18296720)
chr2 (194-244)||(40469729-40469780)
chr2 (191-244)||(2638820-2638874)
chr2 (191-244)||(11883623-11883677)
chr2 (191-244)||(11883926-11883980)
chr2 (191-244)||(24832331-24832385)
chr2 (194-244)||(41790494-41790544)
chr2 (191-244)||(7980003-7980056)
chr2 (191-244)||(26737482-26737534)
chr2 (191-242)||(6495723-6495775)
chr2 (191-246)||(26737779-26737835)
chr2 (205-240)||(15321405-15321440)
chr2 (193-244)||(18055050-18055100)
chr2 (194-244)||(18055316-18055367)
chr2 (191-242)||(40221313-40221364)
chr2 (194-244)||(43495484-43495535)
chr2 (191-244)||(2639482-2639536)
chr2 (191-244)||(7591850-7591904)
chr2 (191-244)||(18296693-18296747)
chr2 (191-244)||(20347464-20347518)
chr2 (191-244)||(26841587-26841641)
chr2 (191-244)||(30190923-30190977)
chr2 (368-417)||(11883628-11883676)
chr2 (368-417)||(11883927-11883975)
chr2 (368-417)||(24832336-24832384)
chr2 (368-417)||(40469730-40469778)
[»] scaffold1221 (3 HSPs)
scaffold1221 (359-489)||(1537-1667)
scaffold1221 (194-294)||(1731-1834)
scaffold1221 (191-244)||(1511-1564)
[»] chr6 (33 HSPs)
chr6 (359-473)||(18242024-18242138)
chr6 (369-473)||(3403867-3403971)
chr6 (369-473)||(30388242-30388346)
chr6 (368-473)||(2762555-2762660)
chr6 (368-442)||(10039844-10039918)
chr6 (368-473)||(13579529-13579634)
chr6 (191-294)||(33971994-33972098)
chr6 (368-442)||(11656583-11656657)
chr6 (191-294)||(18241854-18241960)
chr6 (191-292)||(23250592-23250694)
chr6 (366-427)||(33972188-33972249)
chr6 (191-246)||(10039676-10039731)
chr6 (191-294)||(11656730-11656836)
chr6 (194-240)||(31598732-31598778)
chr6 (191-244)||(21031979-21032032)
chr6 (191-294)||(30388062-30388166)
chr6 (191-243)||(31598274-31598326)
chr6 (191-244)||(3403717-3403771)
chr6 (191-244)||(3403989-3404043)
chr6 (194-244)||(3825530-3825580)
chr6 (191-244)||(18242156-18242210)
chr6 (367-425)||(33658560-33658618)
chr6 (191-244)||(13579651-13579704)
chr6 (191-239)||(21032285-21032334)
chr6 (203-244)||(30388362-30388403)
chr6 (209-240)||(12714450-12714481)
chr6 (191-244)||(33828990-33829044)
chr6 (191-244)||(33829636-33829690)
chr6 (368-417)||(3403722-3403770)
chr6 (368-417)||(3403990-3404038)
chr6 (194-242)||(23250772-23250821)
chr6 (191-244)||(23250892-23250945)
chr6 (191-244)||(33655115-33655168)
[»] chr5 (37 HSPs)
chr5 (359-473)||(25115829-25115943)
chr5 (359-473)||(25174921-25175035)
chr5 (369-473)||(18433087-18433191)
chr5 (370-473)||(34576937-34577040)
chr5 (370-473)||(26020522-26020625)
chr5 (368-493)||(5187574-5187699)
chr5 (371-489)||(9665582-9665700)
chr5 (404-489)||(22429138-22429223)
chr5 (191-294)||(25175099-25175205)
chr5 (191-294)||(34577113-34577217)
chr5 (191-294)||(25116007-25116115)
chr5 (371-473)||(5779742-5779844)
chr5 (191-294)||(18433265-18433370)
chr5 (191-244)||(22429196-22429249)
chr5 (191-294)||(22428934-22429037)
chr5 (194-243)||(23011383-23011432)
chr5 (194-243)||(41382896-41382945)
chr5 (191-243)||(23011079-23011131)
chr5 (191-244)||(33324838-33324892)
chr5 (194-242)||(31569910-31569958)
chr5 (191-242)||(12441042-12441093)
chr5 (191-244)||(5187830-5187884)
chr5 (191-244)||(18433015-18433069)
chr5 (191-244)||(18816952-18817006)
chr5 (371-425)||(23011261-23011315)
chr5 (191-244)||(26020450-26020504)
chr5 (191-245)||(41383166-41383220)
chr5 (191-243)||(25940521-25940574)
chr5 (205-244)||(9665570-9665609)
chr5 (191-242)||(43464194-43464245)
chr5 (191-244)||(18817611-18817665)
chr5 (191-241)||(22729008-22729058)
chr5 (194-244)||(34576870-34576920)
chr5 (368-417)||(5187831-5187879)
chr5 (373-426)||(12441196-12441249)
chr5 (191-236)||(12441320-12441364)
chr5 (368-417)||(18433020-18433068)
[»] chr3 (46 HSPs)
chr3 (359-473)||(20968888-20969002)
chr3 (359-473)||(10293680-10293793)
chr3 (369-473)||(18874961-18875065)
chr3 (370-473)||(9026805-9026907)
chr3 (191-294)||(10293857-10293963)
chr3 (209-294)||(20968737-20968824)
chr3 (368-442)||(3644721-3644795)
chr3 (191-244)||(21896511-21896564)
chr3 (191-294)||(47870823-47870926)
chr3 (191-244)||(10293608-10293662)
chr3 (191-244)||(47871122-47871175)
chr3 (194-278)||(9026739-9026823)
chr3 (191-244)||(3644783-3644837)
chr3 (191-237)||(10771504-10771550)
chr3 (191-241)||(17441066-17441117)
chr3 (191-244)||(3353128-3353181)
chr3 (191-243)||(8314013-8314066)
chr3 (368-425)||(13657622-13657679)
chr3 (191-294)||(17372298-17372403)
chr3 (191-243)||(18874882-18874935)
chr3 (194-246)||(23630033-23630086)
chr3 (191-244)||(26007182-26007235)
chr3 (191-244)||(42673296-42673349)
chr3 (369-426)||(45060774-45060830)
chr3 (370-426)||(4947377-4947433)
chr3 (191-243)||(8315083-8315135)
chr3 (191-294)||(9026982-9027086)
chr3 (367-419)||(18874885-18874936)
chr3 (194-244)||(1101090-1101141)
chr3 (255-294)||(13657513-13657552)
chr3 (191-245)||(20969018-20969073)
chr3 (437-517)||(21895657-21895736)
chr3 (255-294)||(26540817-26540856)
chr3 (191-246)||(42627544-42627599)
chr3 (368-426)||(1101091-1101148)
chr3 (194-244)||(1928434-1928484)
chr3 (209-243)||(4947278-4947312)
chr3 (194-244)||(14015964-14016014)
chr3 (191-244)||(18875191-18875245)
chr3 (194-244)||(26540694-26540744)
chr3 (191-241)||(28702278-28702328)
chr3 (368-425)||(17372474-17372531)
chr3 (192-245)||(17372593-17372645)
chr3 (368-417)||(18875192-18875240)
chr3 (191-244)||(42672978-42673031)
chr3 (191-243)||(45060872-45060925)
[»] chr7 (42 HSPs)
chr7 (359-473)||(9412193-9412307)
chr7 (359-473)||(3687525-3687639)
chr7 (368-493)||(6908391-6908515)
chr7 (371-482)||(35080132-35080243)
chr7 (370-482)||(5349641-5349753)
chr7 (369-457)||(13772793-13772881)
chr7 (366-457)||(15567164-15567255)
chr7 (369-457)||(33628466-33628554)
chr7 (368-473)||(34235856-34235961)
chr7 (191-294)||(3687353-3687461)
chr7 (191-294)||(9412023-9412129)
chr7 (191-294)||(23686667-23686771)
chr7 (191-243)||(38191566-38191619)
chr7 (191-243)||(6908213-6908265)
chr7 (192-244)||(8953889-8953941)
chr7 (206-244)||(5349733-5349771)
chr7 (191-244)||(13863313-13863367)
chr7 (194-294)||(27096290-27096392)
chr7 (194-294)||(27181911-27182013)
chr7 (194-244)||(36527387-36527437)
chr7 (191-244)||(13744233-13744286)
chr7 (191-244)||(48359320-48359373)
chr7 (191-243)||(23686421-23686473)
chr7 (193-244)||(29291808-29291860)
chr7 (191-243)||(35079960-35080012)
chr7 (205-244)||(35080223-35080263)
chr7 (430-473)||(29291982-29292025)
chr7 (191-244)||(3687656-3687710)
chr7 (192-241)||(5735253-5735303)
chr7 (256-294)||(6908280-6908318)
chr7 (191-244)||(9412325-9412379)
chr7 (191-244)||(13772641-13772695)
chr7 (191-244)||(13772901-13772955)
chr7 (194-244)||(22740591-22740641)
chr7 (191-244)||(29292041-29292095)
chr7 (191-244)||(33628660-33628714)
chr7 (191-244)||(44599489-44599543)
chr7 (191-244)||(44600135-44600189)
chr7 (194-238)||(5735553-5735598)
chr7 (194-243)||(6908485-6908534)
chr7 (368-417)||(9412028-9412076)
chr7 (368-417)||(18925230-18925279)
[»] scaffold0319 (4 HSPs)
scaffold0319 (369-473)||(6575-6679)
scaffold0319 (191-244)||(6697-6750)
scaffold0319 (191-244)||(6394-6448)
scaffold0319 (368-417)||(6399-6447)
[»] scaffold0192 (3 HSPs)
scaffold0192 (369-473)||(25247-25351)
scaffold0192 (191-244)||(25369-25423)
scaffold0192 (368-417)||(25370-25418)
[»] scaffold0110 (3 HSPs)
scaffold0110 (367-473)||(45683-45789)
scaffold0110 (191-294)||(45537-45642)
scaffold0110 (191-244)||(45807-45860)
[»] scaffold0002 (2 HSPs)
scaffold0002 (376-473)||(411993-412090)
scaffold0002 (191-244)||(411923-411976)
[»] scaffold0598 (2 HSPs)
scaffold0598 (368-466)||(6752-6850)
scaffold0598 (209-294)||(6626-6710)
[»] scaffold0015 (3 HSPs)
scaffold0015 (366-473)||(16925-17032)
scaffold0015 (191-294)||(17103-17209)
scaffold0015 (191-244)||(16853-16905)
[»] scaffold0001 (7 HSPs)
scaffold0001 (371-442)||(439001-439072)
scaffold0001 (191-292)||(439151-439253)
scaffold0001 (191-244)||(438930-438984)
scaffold0001 (194-243)||(183367-183416)
scaffold0001 (371-425)||(183544-183598)
scaffold0001 (371-417)||(439203-439248)
scaffold0001 (368-417)||(438935-438983)
[»] scaffold0009 (1 HSPs)
scaffold0009 (191-294)||(205687-205790)
[»] scaffold0376 (2 HSPs)
scaffold0376 (191-244)||(7455-7508)
scaffold0376 (191-244)||(7600-7653)
[»] scaffold0328 (1 HSPs)
scaffold0328 (191-244)||(6795-6849)
[»] scaffold0460 (1 HSPs)
scaffold0460 (191-244)||(763-816)
[»] scaffold0433 (1 HSPs)
scaffold0433 (255-294)||(10690-10729)
[»] scaffold0069 (1 HSPs)
scaffold0069 (191-244)||(50507-50560)


Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 616 - 1044
Target Start/End: Original strand, 6373379 - 6373809
Alignment:
Q  616 caagaacaaatatgtttaacaaataatgttagtcactctttccaaagaaaaacatctataaaaatgaaattatatatccaaaacaagtataagcagatca 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6373379 caagaacaaatatgtttaacaaataatgttagtcactctttccaaagaaaaacatctataaaaatgaaattatatatccaaaacaagtataagcagatca 6373478  T
Q  716 agggcaagaacaaatgtgtttaacaaaacagatttggcattttggaaatgtttagaaaatattatcttcggcaattatttttatctgtagtaacgtgt-- 813  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||      
T  6373479 agg-caagaacaaatgtgtttaacaaaacagatttggcattttggaaatgtttagaaaatattatctttgacaattatttttatttgtagtaacgtgtac 6373577  T
Q  814 --gttagtgtaagttaggctatccaggacaattgtatgatgtgttactgttagccttgcgtcggtcatgatctcagattgggccgtgacagcaacggaag 911  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6373578 atgttagtgtaagttaggctatccaggacaattgtatgatgtgttactgttagctttgcgtcggtcatgatctcagattgggccgtgacagcaacggaag 6373677  T
Q  912 cttggggagacatatacttctgttatgcattaaaagttcgggttggac-acatcagcataagattaaatttga-tgcctgtgctgatg-tataatacttt 1008  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| |||| ||||| |||||||||||    
T  6373678 cttggggagacatatacttctgttatgcattaaaagttcgggttggacgacatcagcataagatt-aatttgattgcttgtgttgatgttataatacttt 6373776  T
Q  1009 ctgcttttgtttacctactatcaatcatttctaaaa 1044  Q
    | ||||||||||| |||  |||||||||||||||||    
T  6373777 ccgcttttgttta-cta--atcaatcatttctaaaa 6373809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 359 - 489
Target Start/End: Original strand, 11241558 - 11241688
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  11241558 tataagtgagggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgaaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 11241657  T
Q  459 gatggggtgcaaaattgcacaattggcaaaa 489  Q
    |||||||||||||||  ||||||||||||||    
T  11241658 gatggggtgcaaaatcccacaattggcaaaa 11241688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 3930348 - 3930462
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  3930348 tataagtgagggtgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattggacacaaagatggggtgcaaaatcagaaagggggcaaaaa 3930447  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  3930448 gatggggtgcaaaat 3930462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 518 - 620
Target Start/End: Original strand, 6373255 - 6373357
Alignment:
Q  518 aagattaaattatagaaggattaaaattaggtttagattaaattgaaatttagctttaagaaactaaaacacacttaattttctttaattttcatcatca 617  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6373255 aagattaaattgtagaaggattaaaattaggtttagattaaattgaaatttagctttaagaaaccaaaacacacttaattttctttaattttcatcatca 6373354  T
Q  618 aga 620  Q
    |||    
T  6373355 aga 6373357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 359 - 473
Target Start/End: Complemental strand, 13198790 - 13198676
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    |||||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  13198790 tataagtgagggtgcaaaatcgcacaattagaaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggcaaaaa 13198691  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  13198690 gatggggtgcaaaat 13198676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 369 - 473
Target Start/End: Original strand, 16555695 - 16555799
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  16555695 ggtgcaaaatcgcacaattagcaaaaagataagggggaaaagtgcaattgaacacaaagatggggtgtaaaatcagaaagggggcaaaaagatggggtgc 16555794  T
Q  469 aaaat 473  Q
    |||||    
T  16555795 aaaat 16555799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 5206138 - 5206250
Alignment:
Q  370 gtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgca 469  Q
    |||||||||||||||||||||  ||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  5206138 gtgcaaaatcgcacaattagcaaaaagatagggggaagaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatagggtgca 5206237  T
Q  470 aaattgcacaatt 482  Q
    |||| ||||||||    
T  5206238 aaatcgcacaatt 5206250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 359 - 473
Target Start/End: Complemental strand, 22681765 - 22681652
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    |||||||||  |||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||     
T  22681765 tataagtgaatgtgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatggggtgcaaaattagaaa-ggggcaaaaa 22681667  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  22681666 gatggggtgcaaaat 22681652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 370 - 476
Target Start/End: Complemental strand, 35393651 - 35393545
Alignment:
Q  370 gtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgca 469  Q
    |||||||||||||||||||||  ||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||| |||| |||||||||||    
T  35393651 gtgcaaaatcgcacaattagcaaaaagatagggggcaaaagttcaattgaacacaaagatagggtgcaaaatcaaaaagggggtaaaaagatggggtgca 35393552  T
Q  470 aaattgc 476  Q
    |||||||    
T  35393551 aaattgc 35393545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 6373125 - 6373192
Alignment:
Q  53 tttttagctgaattgacgaatttaacctgataagacatgtgttgattgtgcaattgttgttgacttgg 120  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6373125 tttttagctgaattgacgaatttaatctgataagacatgtgttgattgtgcaattgttgttgacttgg 6373192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 366 - 451
Target Start/End: Complemental strand, 8488363 - 8488278
Alignment:
Q  366 gagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggg 451  Q
    ||||||||||||| |||||||||||  ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8488363 gagggtgcaaaattgcacaattagcaaaaacatagggggcaaaagtgcaattgaacacaaagacggggtgcaaaatcagaaagggg 8488278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 368 - 457
Target Start/End: Original strand, 27304894 - 27304983
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaa 457  Q
    |||||||||||||||||||||||  ||||||| |||| |||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  27304894 gggtgcaaaatcgcacaattagcaaaaagatagggggaaaaagtgcaattgaactcaaatatggggtgcaaaatcagaaaaggggcaaaa 27304983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 3930179 - 3930284
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgca-cccctc-nnnnnnnngagcgattttgcaccctatcttttgccaactgtg 288  Q
    |||||||||||| ||||||||||||||||| |||||| |||||||||||| ||||||         ||||||||||||||||||||||||||||||||||    
T  3930179 ggcttaattgcactttttcccctatcttttattaattatgcgattttgcaccccctctttttttttgagcgattttgcaccctatcttttgccaactgtg 3930278  T
Q  289 ttttgt 294  Q
    ||||||    
T  3930279 ttttgt 3930284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 11241389 - 11241494
Alignment:
Q  191 ggcttaattgcattttttcccct-atcttttgttaattgtgcgattttgca-cccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtg 288  Q
    |||||||||||| |||| | ||| ||||||||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||||||||    
T  11241389 ggcttaattgcacttttcctccttatcttttgttaattgtgcgattttgcatcccctcttttttttgagcgattttgcaccctatcttttgccaactgtg 11241488  T
Q  289 ttttgt 294  Q
    ||||||    
T  11241489 ttttgt 11241494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 13198960 - 13198854
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgca-cccctc-nnnnnnnngagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||||||| ||||||         |||||||||||||||||||||||||||||| ||    
T  13198960 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctcttttgttttgagcgattttgcaccctatcttttgccaaccgt 13198861  T
Q  288 gttttgt 294  Q
    |||||||    
T  13198860 gttttgt 13198854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 3930533 - 3930480
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  3930533 ggcttaattgcacttttccccctatcttttgctaattgtgcgattttgcacccc 3930480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 368 - 425
Target Start/End: Complemental strand, 49178693 - 49178636
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaa 425  Q
    |||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||||    
T  49178693 gggtgcaaaatcgcacaattggcaaaaagatagggggcaaaagtgcaattgaacacaa 49178636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 8488188 - 8488243
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccct 245  Q
    ||||||||||||||||||  || |||||||||||||||||||||||||||||||||    
T  8488188 ggcttaattgcattttttttccatatcttttgttaattgtgcgattttgcacccct 8488243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 35393829 - 35393726
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgca-cccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgt 289  Q
    |||||||||||| ||||  |||||||||||| ||||||||||| |||||| ||||||        |||||||||||||||| |||||||| ||| |||||    
T  35393829 ggcttaattgcacttttcaccctatcttttgctaattgtgcgaatttgcaccccctcttttttatgagcgattttgcaccccatcttttgtcaattgtgt 35393730  T
Q  290 tttg 293  Q
    ||||    
T  35393729 tttg 35393726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 16555515 - 16555569
Alignment:
Q  191 ggcttaattgcattttttcccct-atcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||||||||||    
T  16555515 ggcttaattgcacttttcccccttatcttttgttaattgtgcgattttgcacccc 16555569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 22681576 - 22681628
Alignment:
Q  192 gcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||| |||  |||||||||||||| |||||||||||||||||||||    
T  22681576 gcttaattgcactttcccccctatcttttgtcaattgtgcgattttgcacccc 22681628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 54508815 - 54508918
Alignment:
Q  191 ggcttaattgcattttttcc-cctatcttttgttaattgtgcgattttgcaccc-ctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtg 288  Q
    |||||||||||| ||||||| || ||||||||  ||||||| |||||||||||| |||        |||||||||||||||||||||||||| || ||||    
T  54508815 ggcttaattgcactttttcctccaatcttttgccaattgtgtgattttgcaccctctcttttttttgagcgattttgcaccctatcttttgcaaattgtg 54508914  T
Q  289 tttt 292  Q
    ||||    
T  54508915 tttt 54508918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 7603472 - 7603422
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcac 241  Q
    |||||||||||| |||||||||||||||||   ||||||||||||||||||    
T  7603472 ggcttaattgcactttttcccctatctttttacaattgtgcgattttgcac 7603422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 16555871 - 16555817
Alignment:
Q  191 ggcttaattgcattttttcccct-atcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||    
T  16555871 ggcttaattgcacttttcccccttatcttttgctaattgtgcgattttgcacccc 16555817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 24775837 - 24775783
Alignment:
Q  191 ggcttaattgcattttttcc-cctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| || |||||||||||| |||||||||||||||||||||    
T  24775837 ggcttaattgcacttttccctcctatcttttgtcaattgtgcgattttgcacccc 24775783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 36095817 - 36095871
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||||||||  |||||||||||||  |||||||||||||||||||||    
T  36095817 ggcttaattgcatttttcacccctatcttttgccaattgtgcgattttgcacccc 36095871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 16555818 - 16555866
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  16555818 gggtgcaaaatcgcacaattagc-aaaagataagggggaaaagtgcaatt 16555866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 43292038 - 43292091
Alignment:
Q  192 gcttaattgca-ttttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||| |||||||||||||  ||||| |||||||||||||||||||||    
T  43292038 gcttaattgcacttttttcccctatagtttgtcaattgtgcgattttgcacccc 43292091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 49178866 - 49178763
Alignment:
Q  195 taattgcattttt-tcccctatcttttgttaattgtgcgattttgcacccc---tcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgtt 290  Q
    |||||||| |||| ||||||||||||||  |||||||||||||||||||||   |         |||||||||||||||| |||||||||||| ||||||    
T  49178866 taattgcacttttctcccctatcttttgccaattgtgcgattttgcaccccctctttttttttggagcgattttgcaccccatcttttgccaattgtgtt 49178767  T
Q  291 ttgt 294  Q
    ||||    
T  49178766 ttgt 49178763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 7603146 - 7603197
Alignment:
Q  192 gcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||| |||| |||||||||||| |||||||||| ||||||||||||    
T  7603146 gcttaattgcactttt-cccctatctttttttaattgtgcaattttgcacccc 7603197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 22681933 - 22681881
Alignment:
Q  191 ggcttaattgcattttttcc-cctatcttttgttaattgtgcgattttgcacc 242  Q
    |||||||||||| |||| || ||||||||||||||||||||| ||||||||||    
T  22681933 ggcttaattgcacttttccctcctatcttttgttaattgtgcaattttgcacc 22681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 54509167 - 54509116
Alignment:
Q  194 ttaattgcatttttt--cccctatcttttgttaattgtgcgattttgcaccc 243  Q
    |||||||||||||||  ||||||| ||||| |||||||||||||||||||||    
T  54509167 ttaattgcatttttttccccctattttttgctaattgtgcgattttgcaccc 54509116  T

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Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 3844470 - 3844431
Alignment:
Q  255 gagcgattttgcaccctatcttttgccaactgtgttttgt 294  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  3844470 gagcgattttgcaccccatcttttgccaattgtgttttgt 3844431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 27304731 - 27304770
Alignment:
Q  205 ttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  27304731 ttttcccctatcttctgctaattgtgcgattttgcacccc 27304770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 294
Target Start/End: Original strand, 39415239 - 39415330
Alignment:
Q  205 ttttcccctatcttttgttaattgtgcgattttgcaccc-ctc-nnnnnnnngagcgattttgcaccctatcttttgccaactgtgttttgt 294  Q
    |||| |||||||||||| ||||||||||||||||||||| |||         |||||||||||||||| |||||||| ||| ||||||||||    
T  39415239 tttttccctatcttttgctaattgtgcgattttgcaccctctctttttatttgagcgattttgcaccccatcttttgtcaattgtgttttgt 39415330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 169493 - 169439
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||||||||| |||| |||  ||||| |||||||||||||||||||||    
T  169493 ggcttaattgcatttttcccccctatagtttgtcaattgtgcgattttgcacccc 169439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 293271 - 293217
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||||||| |||  ||||| |||||||||||||||||||||    
T  293271 ggcttaattgcactttttccccctatagtttgtcaattgtgcgattttgcacccc 293217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 5205988 - 5206042
Alignment:
Q  191 ggcttaattgcattttttc-ccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| | ||||||||||||||||||  |||||||||||||||    
T  5205988 ggcttaattgcacttttcctccctatcttttgttaatttggcgattttgcacccc 5206042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 18077256 - 18077202
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  ||||||| ||||| ||||||||||||||||||||||    
T  18077256 ggcttaattgcacttttcacccctattttttgctaattgtgcgattttgcacccc 18077202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 43051306 - 43051252
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||||||||  |||||||||||||  ||||||| |||||||||||||    
T  43051306 ggcttaattgcatttttcacccctatcttttgccaattgtgtgattttgcacccc 43051252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 50678779 - 50678833
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  50678779 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 50678833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 56505693 - 56505747
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| |||||||||  |||||||||||||||||||||    
T  56505693 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 56505747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 5206283 - 5206231
Alignment:
Q  191 ggcttaattgcattttttcccct-atcttttgttaattgtgcgattttgcaccc 243  Q
    |||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||    
T  5206283 ggcttaattgcacttttcccccttatctttt-ttaattgtgcgattttgcaccc 5206231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 8182045 - 8181996
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    |||||||||||||||||||| ||  || |||| |||||||||||||||||    
T  8182045 gggtgcaaaatcgcacaattggcaaaacgatagggggcaaaagtgcaatt 8181996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 11241714 - 11241661
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||| | |||| |||||||||||||  ||||||| |||||||||||||    
T  11241714 ggcttaattgtacttttccccctatcttttgccaattgtgggattttgcacccc 11241661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 16555568 - 16555520
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    ||||||||||||||||||||| |  |||||||||||| ||||||||||||    
T  16555568 gggtgcaaaatcgcacaattaaca-aaagataagggggaaaagtgcaatt 16555520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 47219252 - 47219203
Alignment:
Q  194 ttaattgcattttttccc-ctatcttttgttaattgtgcgattttgcacc 242  Q
    ||||||||||||||  || |||||||||| ||||||||||||||||||||    
T  47219252 ttaattgcatttttcacctctatcttttgctaattgtgcgattttgcacc 47219203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 103; Significance: 1e-50; HSPs: 3)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 1288 - 1402
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1288 tataagtgagggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 1387  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  1388 gatggggtgcaaaat 1402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 1118 - 1224
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgca-cccctc-nnnnnnnngagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||         ||||||||||||||||||||||||||||| |||    
T  1118 ggcttaattgcactttttccccctatcttttgttaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatcttttgccaattgt 1217  T
Q  288 gttttgt 294  Q
    |||||||    
T  1218 gttttgt 1224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 1474 - 1420
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||||||| |||||||||  |||||||||||||||||||||    
T  1474 ggcttaattgcactttttccccctatcttttgccaattgtgcgattttgcacccc 1420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 1e-50; HSPs: 54)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 15156053 - 15156167
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15156053 tataagtgagggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 15156152  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  15156153 gatggggtgcaaaat 15156167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 359 - 473
Target Start/End: Complemental strand, 12281310 - 12281196
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    |||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  12281310 tataagtgagggtgcaaaatcgcacagttagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatctgaaagggggcaaaaa 12281211  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  12281210 gatggggtgcaaaat 12281196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 369 - 473
Target Start/End: Complemental strand, 37752290 - 37752186
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37752290 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 37752191  T
Q  469 aaaat 473  Q
    |||||    
T  37752190 aaaat 37752186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 359 - 473
Target Start/End: Complemental strand, 765920 - 765806
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    |||||||||||||||||||||||||  |||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  765920 tataagtgagggtgcaaaatcgcacggttagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatctgaaagggggcaaaaa 765821  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  765820 gatggggtgcaaaat 765806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 359 - 475
Target Start/End: Original strand, 43162405 - 43162521
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  43162405 tataagtgaggatgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaaggggacaaaaa 43162504  T
Q  459 gatggggtgcaaaattg 475  Q
    |||| ||||||||||||    
T  43162505 gatgaggtgcaaaattg 43162521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 369 - 473
Target Start/End: Complemental strand, 43246047 - 43245943
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43246047 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgtaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 43245948  T
Q  469 aaaat 473  Q
    |||||    
T  43245947 aaaat 43245943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 34313932 - 34314046
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    |||||||||||||||||||||| |||||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||     
T  34313932 tataagtgagggtgcaaaatcgtacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaaaggggcaaaaa 34314031  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  34314032 gatggggtgcaaaat 34314046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 41662271 - 41662385
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||| |||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||     
T  41662271 tataagtgaaggtgtaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagataaggtgcaaaatcagaaagggggcaaaaa 41662370  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  41662371 gatggggtgcaaaat 41662385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 369 - 472
Target Start/End: Complemental strand, 16929115 - 16929013
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||| |||||||| |  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16929115 ggtgcaaaatctcacaattaacaaaaagataaggggcaaaagtgcaatt-aacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 16929017  T
Q  469 aaaa 472  Q
    ||||    
T  16929016 aaaa 16929013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 368 - 457
Target Start/End: Complemental strand, 18019964 - 18019875
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaa 457  Q
    ||||||||||||||||||||||   ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18019964 gggtgcaaaatcgcacaattaggaaaaagatagggggcaaaagtgcaattgaacacaaagatgcggtgcaaaatcagaaagggggcaaaa 18019875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 370 - 473
Target Start/End: Original strand, 74864 - 74967
Alignment:
Q  370 gtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgca 469  Q
    ||||||||||||||||||  |  ||||||| ||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  74864 gtgcaaaatcgcacaattgacaaaaagataggggacaaaagtgcaattaaacacaaagatgtggtgcaaaatcagaaagggggcaaaaagatggggtgca 74963  T
Q  470 aaat 473  Q
    ||||    
T  74964 aaat 74967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 368 - 480
Target Start/End: Original strand, 7127828 - 7127940
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtg 467  Q
    |||||||||||| | ||||||||  ||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| |||| |||| ||| |||||    
T  7127828 gggtgcaaaatcacgcaattagcaaaaagatagggggtaaaagtgcaattgaacacaaaaatgggatgcaaaatcagaaaaggggtaaaaagatagggtg 7127927  T
Q  468 caaaattgcacaa 480  Q
    |||||| ||||||    
T  7127928 caaaatcgcacaa 7127940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 362 - 442
Target Start/End: Complemental strand, 9465755 - 9465675
Alignment:
Q  362 aagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 442  Q
    ||||| ||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  9465755 aagtgggggtgcaaaatcgcacagttagcaaaaagatagggggcaaaagtgcaattgaacacaaagatagggtgcaaaatc 9465675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 34313765 - 34313868
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgca-cccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgt 289  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||| ||||||||    
T  34313765 ggcttaattgcactttt-cccctatcttttgttaattgtgcgattttgcaccccctcttttttttgagcgattttgcaccctatcttttgcaaactgtgt 34313863  T
Q  290 tttgt 294  Q
    |||||    
T  34313864 tttgt 34313868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 15155883 - 15155989
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc-tcnnnnnnnn-gagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||||||    
T  15155883 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatcttttgccaactgt 15155982  T
Q  288 gttttgt 294  Q
    |||||||    
T  15155983 gttttgt 15155989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 368 - 457
Target Start/End: Original strand, 37670132 - 37670221
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaa 457  Q
    |||||||||||| ||||||||||  ||| ||| ||  ||||| ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  37670132 gggtgcaaaatcacacaattagcaaaaaaatatggtacaaaaatgcaattaaacacaaagatggggtgctaaatcagaaagggggcaaaa 37670221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 18020140 - 18020037
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgca-cccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgt 289  Q
    |||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||||        |||||||||||||||| |||||||| |||||| ||    
T  18020140 ggcttaattgcacttttaccc-tatcttttgttaattgtgcgattttgcaccccctcttttttttgagcgattttgcaccccatcttttggcaactgcgt 18020042  T
Q  290 tttgt 294  Q
    |||||    
T  18020041 tttgt 18020037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 33748161 - 33748236
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaaga--taaggggcaaaagtgcaattgaacacaaagatggggtgcaaaat 441  Q
    |||||||||||||||||||||||  ||| |  || |||||||||||||||||||||||||||||| ||||||||||    
T  33748161 gggtgcaaaatcgcacaattagcaaaaaaaaatagggggcaaaagtgcaattgaacacaaagatgaggtgcaaaat 33748236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 9465923 - 9465874
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9465923 ttaattgcattttttccc-tatcttttgttaattgtgcgattttgcacccc 9465874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 12281480 - 12281374
Alignment:
Q  191 ggcttaattgcattttttcccct-atcttttgttaattgtgcgattttgca-cccctc-nnnnnnnngagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||         |||||||||| |||||||||||||| |||||||    
T  12281480 ggcttaattgcacttttcccccttatcttttgttaattgtgcgattttgcaccccctctttttttttgagcgattttccaccctatcttttgtcaactgt 12281381  T
Q  288 gttttgt 294  Q
    |||||||    
T  12281380 gttttgt 12281374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 41662107 - 41662213
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgca-cccctc-nnnnnnnngagcgattttgcaccctatcttttgccaactgt 287  Q
    ||||||||||||  |||||||| |||||||||||||||||||||||||||| ||||||          |||||||||||||| |||||||||||||||||    
T  41662107 ggcttaattgcacattttccccatatcttttgttaattgtgcgattttgcaccccctctttttttttaagcgattttgcaccatatcttttgccaactgt 41662206  T
Q  288 gttttgt 294  Q
    |||||||    
T  41662207 gttttgt 41662213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 16929296 - 16929191
Alignment:
Q  191 ggcttaattgcattttt-tcccctatcttttgttaattgtgcgattttgca-cccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtg 288  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||        || ||||||||||||| |||||||| ||| ||||    
T  16929296 ggcttaattgcacttttctcccctatcttttgctaattgtgcgattttgcaccccctcttttttttgaacgattttgcaccccatcttttgtcaattgtg 16929197  T
Q  289 ttttgt 294  Q
    ||||||    
T  16929196 ttttgt 16929191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 37752470 - 37752365
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgca-cccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtg 288  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||||||| ||||||        |||||||||||||||| || ||||| ||| ||||    
T  37752470 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctcttttttttgagcgattttgcaccccatattttgtcaattgtg 37752371  T
Q  289 ttttgt 294  Q
    ||||||    
T  37752370 ttttgt 37752365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 43162234 - 43162341
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacc-cctc---nnnnnnnngagcgattttgcaccctatcttttgccaactg 286  Q
    |||||||||||| |||| ||||||| |||||||||||||||||||||||||| ||||           ||||||||||||||||||||||||| ||| ||    
T  43162234 ggcttaattgcacttttccccctatattttgttaattgtgcgattttgcacctcctctttttttttttgagcgattttgcaccctatcttttgtcaattg 43162333  T
Q  287 tgttttgt 294  Q
    ||||||||    
T  43162334 tgttttgt 43162341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 766022 - 765983
Alignment:
Q  255 gagcgattttgcaccctatcttttgccaactgtgttttgt 294  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  766022 gagcgattttgcaccctatcttttgccaactgtgttttgt 765983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 43245871 - 43245925
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  43245871 ggcttaattgcactttttccccctatcttttgataattgtgcgattttgcacccc 43245925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 33747984 - 33748089
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcaccc-ctcnnnnnnnn-gagcgattttgcaccctatcttttgccaactgtg 288  Q
    |||||||||||| ||||| || ||||||||| |||||||| ||||||||| || |||         ||||||||||||||||||||||||||||| ||||    
T  33747984 ggcttaattgcacttttttccatatcttttgctaattgtgtgattttgcatccgctctttttttttgagcgattttgcaccctatcttttgccaattgtg 33748083  T
Q  289 ttttgt 294  Q
    ||||||    
T  33748084 ttttgt 33748089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 9930550 - 9930633
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccctcnnnnnnnngagcgattttgcaccctatcttttgcc 281  Q
    ||||||| |||||||||  ||||||||||||||||||||||| ||||||| |         |||||||||||||||||||||||||||    
T  9930550 ttaattgtattttttcctttatcttttgttaattgtgcgattgtgcaccctt----tttttgagcgattttgcaccctatcttttgcc 9930633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 3307338 - 3307388
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgca 240  Q
    |||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  3307338 ggcttaattgcatttttcacccctatcttttgtcaattgtgcgattttgca 3307388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 15156239 - 15156185
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| |||||||||| |||||||||||||||||||||    
T  15156239 ggcttaattgcacttttcccccctatcttttgtcaattgtgcgattttgcacccc 15156185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 22851390 - 22851444
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||| |||||||||||||||||||||    
T  22851390 ggcttaattgcacttttcacccctatcttttgtcaattgtgcgattttgcacccc 22851444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 25439176 - 25439126
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||| ||||||||||||  ||||| |||||||||||||||||||||    
T  25439176 ttaattgcactttttcccctatagtttgtcaattgtgcgattttgcacccc 25439126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 74688 - 74789
Alignment:
Q  193 cttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgtttt 292  Q
    |||||||||| |||| || | |||||||| |||||||||||||||||||||||          ||||||||||||||  ||||||||| || ||||||||    
T  74688 cttaattgcacttttccctccatcttttgctaattgtgcgattttgcacccctttttttttttagcgattttgcacctcatcttttgctaattgtgtttt 74787  T
Q  293 gt 294  Q
    ||    
T  74788 gt 74789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 3463642 - 3463694
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||| ||||||  ||||||||||||||||||||||| ||||||||||||    
T  3463642 ggcttaattacattttc-cccctatcttttgttaattgtgcaattttgcacccc 3463694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 6092777 - 6092825
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgca 240  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  6092777 ggcttaattgcattttc-cccctatcttttgtcaattgtgcgattttgca 6092825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 13936723 - 13936776
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| ||||||||||||   |||||||||||||||||||||    
T  13936723 ggcttaattgcacttttccccctatcttttaccaattgtgcgattttgcacccc 13936776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 43162588 - 43162539
Alignment:
Q  195 taattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||| |||| |||||||||||||| ||| |||||||||||||||||    
T  43162588 taattgcacttttccccctatcttttgtcaatcgtgcgattttgcacccc 43162539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 378 - 443
Target Start/End: Complemental strand, 43597957 - 43597892
Alignment:
Q  378 tcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatca 443  Q
    |||||||||||||  ||||||| ||||||||||  ||||||||||||||| || | ||||||||||    
T  43597957 tcgcacaattagcaaaaagatagggggcaaaagcacaattgaacacaaagttgagatgcaaaatca 43597892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 43598793 - 43598756
Alignment:
Q  206 tttcccctatcttttgttaattgtgcgattttgcaccc 243  Q
    |||||||||||||||| |||||||||||||||||||||    
T  43598793 tttcccctatcttttgctaattgtgcgattttgcaccc 43598756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 767759 - 767720
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtg 230  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  767759 ggcttaattgcacttttccccctatcttttgttaattgtg 767720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 16928961 - 16928996
Alignment:
Q  209 cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||||| ||||||||||||||||||||||    
T  16928961 cccctatcttttgctaattgtgcgattttgcacccc 16928996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 366 - 425
Target Start/End: Complemental strand, 22786989 - 22786930
Alignment:
Q  366 gagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaa 425  Q
    |||||||||||||||||||| |  |  | ||||||||||||||||||||||| |||||||    
T  22786989 gagggtgcaaaatcgcacaactgacaaatagataaggggcaaaagtgcaattaaacacaa 22786930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 7127660 - 7127702
Alignment:
Q  198 ttgcattttttcccctatcttttgttaattgtgcgattttgca 240  Q
    ||||| |||| ||||||||||||| ||||||||||||||||||    
T  7127660 ttgcacttttccccctatcttttgctaattgtgcgattttgca 7127702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 7127973 - 7127923
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaa-ttgtgcgattttgcaccc 243  Q
    ||||||||| ||||| |||||||||||| ||| ||||||||||||||||||    
T  7127973 ttaattgcacttttttccctatcttttgctaatttgtgcgattttgcaccc 7127923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 9822748 - 9822802
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||| | |||||||||||||||||||||    
T  9822748 ggcttaattgcacttttcacccctatcttttatcaattgtgcgattttgcacccc 9822802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 9823415 - 9823361
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  9823415 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 9823361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 11007563 - 11007613
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcac 241  Q
    ||||||||| ||||||| |  |||||||||| |||||||||||||||||||    
T  11007563 ggcttaattacatttttcctgctatcttttgctaattgtgcgattttgcac 11007613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 23123338 - 23123392
Alignment:
Q  191 ggcttaattgcattttttcc-cctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| || |||||||||||| |||||||||||||| ||||||    
T  23123338 ggcttaattgcacttttccctcctatcttttgtcaattgtgcgattttacacccc 23123392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 37670021 - 37670059
Alignment:
Q  256 agcgattttgcaccctatcttttgccaactgtgttttgt 294  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  37670021 agcgattttgcaccccatcttttgccaattgtgttttgt 37670059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 37752084 - 37752138
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| ||| ||||| ||||||||||||||||||||||    
T  37752084 ggcttaattgcacttttcccccctatgttttgctaattgtgcgattttgcacccc 37752138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #51
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 39724102 - 39724048
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  39724102 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 39724048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #52
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 41662457 - 41662403
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| |||||||||  |||||||||||||||||||||    
T  41662457 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 41662403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #53
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 43246230 - 43246176
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| ||||||||| |||||||| |||||||||||||    
T  43246230 ggcttaattgcacttttcccccctatcttttgctaattgtgtgattttgcacccc 43246176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #54
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 12281427 - 12281475
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    ||||||||||||||||||||| |  |||||||||||| ||||||||||||    
T  12281427 gggtgcaaaatcgcacaattaac-aaaagataagggggaaaagtgcaatt 12281475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 1e-50; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 359 - 489
Target Start/End: Original strand, 8108890 - 8109020
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    |||||||||||||| |||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  8108890 tataagtgagggtgtaaaatcgcacaattagcaaaaagatatggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcaaaaagggggcaaaaa 8108989  T
Q  459 gatggggtgcaaaattgcacaattggcaaaa 489  Q
    ||||||||||||||| |||||||||||||||    
T  8108990 gatggggtgcaaaatcgcacaattggcaaaa 8109020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 17518472 - 17518588
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17518472 tataagtgagggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 17518571  T
Q  459 gatggggtgcaaaattgc 476  Q
    ||| ||||||||||||||    
T  17518572 gat-gggtgcaaaattgc 17518588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 359 - 473
Target Start/End: Complemental strand, 41083094 - 41082980
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  41083094 tataagtgagggtgcaaaatcgcacaattagtaaaaagataaggggcaaaagtacaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 41082995  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  41082994 gatggggtgcaaaat 41082980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 359 - 473
Target Start/End: Complemental strand, 47955492 - 47955378
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||| ||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  47955492 tataattgagggtgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggcaaaaa 47955393  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  47955392 gatggggtgcaaaat 47955378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 369 - 473
Target Start/End: Original strand, 22149580 - 22149683
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  22149580 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattaaacacaaagatggggtgcaaaatcagaaa-ggggcaaaaagatggggtgc 22149678  T
Q  469 aaaat 473  Q
    |||||    
T  22149679 aaaat 22149683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 8108724 - 8108826
Alignment:
Q  194 ttaattgcattttttc-ccctatcttttgttaattgtgcgattttgcacccc-tcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgttt 291  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||    
T  8108724 ttaattgcacttttcctccctatcttttgttaattgtgcgattttgcacccccttttttttttgagcgattttgcaccctatcttttgccaactgtgttt 8108823  T
Q  292 tgt 294  Q
    |||    
T  8108824 tgt 8108826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 17518303 - 17518408
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc-tcnnnnnnnn-gagcgattttgcaccctatcttttgccaactgtg 288  Q
    ||||||||||||  ||| ||| |||||||||||||||||||||||||||||||| ||         ||||||||||||||||||||||||||||||||||    
T  17518303 ggcttaattgcacctttccccttatcttttgttaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatcttttgccaactgtg 17518402  T
Q  289 ttttgt 294  Q
    ||||||    
T  17518403 ttttgt 17518408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 47955662 - 47955556
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc-tcnnnnnnnn-gagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||||| |||| |||| |||||||| ||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||||||    
T  47955662 ggcttaattgcacttttcccccctatcttttattaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatcttttgccaactgt 47955563  T
Q  288 gttttgt 294  Q
    |||||||    
T  47955562 gttttgt 47955556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 31848246 - 31848142
Alignment:
Q  191 ggcttaattgcattttt-tcccctatcttttgttaattgtgcgattttgcacccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgt 289  Q
    |||||||||||| |||| |||||||||||||||||||||| ||||||||||||||          |||||||||||||||| |||||||| ||| |||||    
T  31848246 ggcttaattgcacttttctcccctatcttttgttaattgtacgattttgcaccccctcttttttcgagcgattttgcaccccatcttttgtcaattgtgt 31848147  T
Q  290 tttgt 294  Q
    |||||    
T  31848146 tttgt 31848142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 13589712 - 13589659
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  13589712 ggcttaattgcacttttccccctatcttttgctaattgtgcgattttgcacccc 13589659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 41083264 - 41083211
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  41083264 ggcttaattgcacttttccccctatcttttgttagttgtgcgattttgcacccc 41083211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 22149403 - 22149506
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgca-cccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgt 289  Q
    |||||||||||| |||| ||||||||||| || ||||||||||||||||| ||||||        |||||||||||||||| |||||||| ||| ||||     
T  22149403 ggcttaattgcacttttccccctatctttggt-aattgtgcgattttgcaccccctcttttttttgagcgattttgcaccccatcttttgtcaattgtgc 22149501  T
Q  290 tttgt 294  Q
    |||||    
T  22149502 tttgt 22149506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 1176717 - 1176804
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccctcnnnnnnnngagcgattttgcaccctatctttt 278  Q
    |||||||||||| |||  ||||||| ||||| |||||||||||||||||| |||||         |||||||||||||||||||||||    
T  1176717 ggcttaattgcactttcccccctatattttgctaattgtgcgattttgcatccctctttttttttagcgattttgcaccctatctttt 1176804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 17518653 - 17518602
Alignment:
Q  193 cttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||| |||| |||||||||||||  |||||||||||||||||||||    
T  17518653 cttaattgcacttttccccctatcttttgccaattgtgcgattttgcacccc 17518602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 20480168 - 20480221
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||||  ||||| |||||||||||||||||||||    
T  20480168 ggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 20480221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 50615674 - 50615621
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||||  ||||| |||||||||||||||||||||    
T  50615674 ggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 50615621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 50623502 - 50623449
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||||  ||||| |||||||||||||||||||||    
T  50623502 ggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 50623449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 473
Target Start/End: Complemental strand, 31848067 - 31847966
Alignment:
Q  371 tgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgca--aaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||||||||| ||  |||||||  |||||||||||||||| |||||||  |   ||| ||  ||| |||||||||||||||| ||| ||||||    
T  31848067 tgcaaaatcgcacaattggcaaaaagatagagggcaaaagtgcaattaaacacaagaa---ggtccatcaaaccagaaagggggcaaaaagatcgggtgc 31847971  T
Q  469 aaaat 473  Q
    |||||    
T  31847970 aaaat 31847966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 438 - 489
Target Start/End: Complemental strand, 48190848 - 48190798
Alignment:
Q  438 aaatcagaaagggggcaaaaggatggggtgcaaaattgcacaattggcaaaa 489  Q
    |||| |||||||||| ||||| |||||||||||||| |||||||||||||||    
T  48190848 aaattagaaagggggaaaaag-atggggtgcaaaatcgcacaattggcaaaa 48190798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 6002237 - 6002291
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||| ||||||| |||||||||||||    
T  6002237 ggcttaattgcacttttcacccctatcttttgtcaattgtgtgattttgcacccc 6002291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 8109047 - 8108993
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| |||||||||  |||||||||||||||||||||    
T  8109047 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 8108993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 39692054 - 39692000
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| ||| |||||| |||||||||||||||||||||    
T  39692054 ggcttaattgcacttttcccccctatattttgtcaattgtgcgattttgcacccc 39692000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 41083196 - 41083158
Alignment:
Q  256 agcgattttgcaccctatcttttgccaactgtgttttgt 294  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  41083196 agcgattttgcacccaatattttgccaactgtgttttgt 41083158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 47955306 - 47955360
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| |||||||||  |||||||||||||||||||||    
T  47955306 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 47955360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 48190771 - 48190825
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  48190771 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 48190825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 49284409 - 49284463
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  49284409 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 49284463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 20371406 - 20371353
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||||  ||||  |||||||||||||||||||||    
T  20371406 ggcttaattgcacttttccccctatagtttgccaattgtgcgattttgcacccc 20371353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 22149734 - 22149701
Alignment:
Q  209 cccctatcttttgttaattgtgcgattttgcacc 242  Q
    ||||||||||||| ||||||||||||||||||||    
T  22149734 cccctatcttttgctaattgtgcgattttgcacc 22149701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 454 - 491
Target Start/End: Complemental strand, 24671318 - 24671281
Alignment:
Q  454 aaaaggatggggtgcaaaattgcacaattggcaaaaaa 491  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  24671318 aaaaggatggagtgcaaaatcgcacaattggcaaaaaa 24671281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 27172116 - 27172169
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||||  ||||  |||||||||||||||||||||    
T  27172116 ggcttaattgcacttttccccctatagtttgccaattgtgcgattttgcacccc 27172169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 49318496 - 49318447
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgca 240  Q
    ||||||||||||||||| |||||||  ||| | |||||||||||||||||    
T  49318496 ggcttaattgcatttttccccctatagtttatcaattgtgcgattttgca 49318447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 4e-50; HSPs: 44)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 6171325 - 6171442
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6171325 tataagtgagggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 6171424  T
Q  459 gatggggtgcaaaattgc 476  Q
    ||||||||||||||||||    
T  6171425 gatggggtgcaaaattgc 6171442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 20347332 - 20347446
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  20347332 tataagtgagggtgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaaggggacaaaaa 20347431  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  20347432 gatggggtgcaaaat 20347446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 359 - 473
Target Start/End: Complemental strand, 30191109 - 30190995
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  30191109 tataagtgagggtgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggcaaaaa 30191010  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  30191009 gatggggtgcaaaat 30190995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 32673011 - 32673125
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||     
T  32673011 tataagtgagggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagagggcgaaaa 32673110  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  32673111 gatggggtgcaaaat 32673125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 369 - 476
Target Start/End: Complemental strand, 11883799 - 11883692
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||    
T  11883799 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcataaagggggcaaaaagatgaggtgc 11883700  T
Q  469 aaaattgc 476  Q
    ||||||||    
T  11883699 aaaattgc 11883692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 366 - 473
Target Start/End: Original strand, 26737655 - 26737763
Alignment:
Q  366 gagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt-gaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggg 464  Q
    |||||||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26737655 gagggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaatttgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggg 26737754  T
Q  465 gtgcaaaat 473  Q
    ||| |||||    
T  26737755 gtgtaaaat 26737763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 369 - 473
Target Start/End: Original strand, 40469607 - 40469711
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||||||||||||||  || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40469607 ggtgcaaaatcgcacaattagcaaaacgataagggggaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 40469706  T
Q  469 aaaat 473  Q
    |||||    
T  40469707 aaaat 40469711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 367 - 447
Target Start/End: Original strand, 15920911 - 15920991
Alignment:
Q  367 agggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaa 447  Q
    |||||| |||||||||||||||||  |||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  15920911 agggtgtaaaatcgcacaattagcaaaaagttagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaa 15920991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 40221489 - 40221563
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 442  Q
    |||||||||||||||||||||||  ||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  40221489 gggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagcgcaattgaacacaaagatggggtgcaaaatc 40221563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 368 - 473
Target Start/End: Complemental strand, 17345908 - 17345803
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtg 467  Q
    ||||| ||||||||||||||| |  ||| ||| ||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||| ||| |||||    
T  17345908 gggtgaaaaatcgcacaattaacaaaaatatagggggcaaaagtgcaattgaacacaaagatggagtgcaaaatcaaaagggggccaaaaagatagggtg 17345809  T
Q  468 caaaat 473  Q
    ||||||    
T  17345808 caaaat 17345803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 20347163 - 20347268
Alignment:
Q  191 ggcttaattgcattttttccc-ctatcttttgttaattgtgcgattttgcacccctcnnnnnnnn-gagcgattttgcaccctatcttttgccaactgtg 288  Q
    ||||||||| || |||| ||| |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||    
T  20347163 ggcttaattacacttttcccctctatcttttgttaattgtgcgattttgcacccctctttttttttgagcgattttgcaccctatcttttgccaactgtg 20347262  T
Q  289 ttttgt 294  Q
    ||||||    
T  20347263 ttttgt 20347268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 6171156 - 6171261
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacc--cctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtg 288  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||    |         ||| ||||||||||||||||||||||||||||||    
T  6171156 ggcttaattgcacttttccccctatcttttgttaattgtgcgattttgcaccttttttttttttttgagtgattttgcaccctatcttttgccaactgtg 6171255  T
Q  289 ttttgt 294  Q
    ||||||    
T  6171256 ttttgt 6171261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 30191279 - 30191173
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc-tcnnnnnnnn-gagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||||| |||| |||| |||||||| ||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||||||    
T  30191279 ggcttaattgcacttttcccccctatcttttattaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatcttttgccaactgt 30191180  T
Q  288 gttttgt 294  Q
    |||||||    
T  30191179 gttttgt 30191173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 32672842 - 32672948
Alignment:
Q  191 ggcttaattgcattttt-tcccctatcttttgttaattgtgcgattttgcaccc-ctcnnnnnnnn-gagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||||| |||| | || ||||||||||||||||||||||||||||||| |||         |||||||||||||||||||||||||||||||||    
T  32672842 ggcttaattgcacttttgttccttatcttttgttaattgtgcgattttgcaccctctctttttttttgagcgattttgcaccctatcttttgccaactgt 32672941  T
Q  288 gttttgt 294  Q
    |||||||    
T  32672942 gttttgt 32672948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 15920799 - 15920883
Alignment:
Q  211 cctatcttttgttaattgtgcgattttgca-cccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgttttgt 294  Q
    |||||||||||||||||||||||||||||| ||||||        |||| ||||||||||| |||||||||||| ||||||||||    
T  15920799 cctatcttttgttaattgtgcgattttgcaccccctcttttttttgagcaattttgcaccccatcttttgccaattgtgttttgt 15920883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 32673193 - 32673143
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||||||    
T  32673193 ttaattgcactttttcccctatcttttgccaattgtgcgattttgcacccc 32673143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 40469427 - 40469533
Alignment:
Q  191 ggcttaattgcattttttcc-cctatcttttgttaattgtgcgattttgca-cccctc-nnnnnnnngagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||| |||||| || ||||||||||| |||||||||||||||||| ||||||         ||||||||||||||||||||||||| ||| |||    
T  40469427 ggcttaattgtatttttccctcctatcttttgctaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatcttttgtcaattgt 40469526  T
Q  288 gttttgt 294  Q
    |||||||    
T  40469527 gttttgt 40469533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 17346088 - 17346037
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacc 242  Q
    |||||||||||| |||||||  ||||||||| ||||||||||||||||||||    
T  17346088 ggcttaattgcactttttcctttatcttttgctaattgtgcgattttgcacc 17346037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 438 - 489
Target Start/End: Original strand, 18296670 - 18296720
Alignment:
Q  438 aaatcagaaagggggcaaaaggatggggtgcaaaattgcacaattggcaaaa 489  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  18296670 aaatcagaaagggggaaaaag-atggggtgcaaaatcgcacaattggcaaaa 18296720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 40469780 - 40469729
Alignment:
Q  194 ttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  40469780 ttaattgcactttttccccctatcttttgctaattgtgcgattttgcacccc 40469729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 2638820 - 2638874
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||||||||  |||||||||||||  |||||||||||||||||||||    
T  2638820 ggcttaattgcatttttcacccctatcttttgccaattgtgcgattttgcacccc 2638874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 11883623 - 11883677
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||    
T  11883623 ggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcacccc 11883677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 11883980 - 11883926
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||    
T  11883980 ggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcacccc 11883926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 24832331 - 24832385
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||    
T  24832331 ggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcacccc 24832385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 41790494 - 41790544
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||||| |||||||  ||||| |||||||||||||||||||||    
T  41790494 ttaattgcatttttccccctatagtttgtcaattgtgcgattttgcacccc 41790544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 7980056 - 7980003
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||||| ||||  |||| ||||||||||||||||||||||    
T  7980056 ggcttaattgcactttttcctctatagtttgctaattgtgcgattttgcacccc 7980003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 26737482 - 26737534
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| | ||||||||||| ||||||||||||||||||||||    
T  26737482 ggcttaattgcactttt-ctcctatcttttgctaattgtgcgattttgcacccc 26737534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 6495775 - 6495723
Alignment:
Q  191 ggcttaattgcattttttc-ccctatcttttgttaattgtgcgattttgcacc 242  Q
    |||||||||||| |||| | ||||||||||||| |||||||||||||||||||    
T  6495775 ggcttaattgcacttttcctccctatcttttgtgaattgtgcgattttgcacc 6495723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 26737835 - 26737779
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccctc 246  Q
    |||||||||||| ||||  ||||||||||||| ||| ||||||||||||||||||||    
T  26737835 ggcttaattgcacttttcacccctatcttttgctaactgtgcgattttgcacccctc 26737779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 15321405 - 15321440
Alignment:
Q  205 ttttcccctatcttttgttaattgtgcgattttgca 240  Q
    ||||||||||||||||||||||||||| ||||||||    
T  15321405 ttttcccctatcttttgttaattgtgcaattttgca 15321440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 18055050 - 18055100
Alignment:
Q  193 cttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||| |||| |||||| |||||| ||||||||||||||||||||||    
T  18055050 cttaattgcacttttcccccta-cttttgctaattgtgcgattttgcacccc 18055100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 18055367 - 18055316
Alignment:
Q  194 ttaattgcattttttccc-ctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||| |||||||| ||| ||||||| |||||||||||||||||||||    
T  18055367 ttaattgcactttttccctctaccttttgtcaattgtgcgattttgcacccc 18055316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 40221313 - 40221364
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacc 242  Q
    ||||||||||||  ||| ||||||||||||| ||||||| ||||||||||||    
T  40221313 ggcttaattgcacctttccccctatcttttgctaattgttcgattttgcacc 40221364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 43495535 - 43495484
Alignment:
Q  194 ttaattgcattttttcccctatctttt-gttaattgtgcgattttgcacccc 244  Q
    ||||||||| |||| |||||||||||| || |||||||||||||||||||||    
T  43495535 ttaattgcacttttccccctatctttttgtcaattgtgcgattttgcacccc 43495484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 2639536 - 2639482
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  2639536 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 2639482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 7591904 - 7591850
Alignment:
Q  191 ggcttaattgcattttttcc-cctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||||| |||  | |||||||||||| |||||||||||||||||||||    
T  7591904 ggcttaattgcatctttcactcctatcttttgtcaattgtgcgattttgcacccc 7591850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 18296747 - 18296693
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  18296747 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 18296693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 20347518 - 20347464
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| |||||||||  |||||||||||||||||||||    
T  20347518 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 20347464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 26841587 - 26841641
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  26841587 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 26841641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 30190923 - 30190977
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| |||||||||  |||||||||||||||||||||    
T  30190923 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 30190977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 11883676 - 11883628
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    |||||||||||||||||||||||  ||||||| |||| ||||||||||||    
T  11883676 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 11883628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 11883927 - 11883975
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    |||||||||||||||||||||||  ||||||| |||| ||||||||||||    
T  11883927 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 11883975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 24832384 - 24832336
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    |||||||||||||||||||||||  ||||||| |||| ||||||||||||    
T  24832384 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 24832336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 40469730 - 40469778
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    |||||||||||||||||||||||  ||||||| |||| ||||||||||||    
T  40469730 gggtgcaaaatcgcacaattagc-aaaagatagggggaaaaagtgcaatt 40469778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1221 (Bit Score: 99; Significance: 3e-48; HSPs: 3)
Name: scaffold1221
Description:

Target: scaffold1221; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 359 - 489
Target Start/End: Complemental strand, 1667 - 1537
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||||||||||||||||||||||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  1667 tataagtgagggtgcaaaatcgcacaattagcaaaaagataagagacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaataa 1568  T
Q  459 gatggggtgcaaaattgcacaattggcaaaa 489  Q
    |||||||||||||||  ||||||||||||||    
T  1567 gatggggtgcaaaatcacacaattggcaaaa 1537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1221; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 1834 - 1731
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacc-cctcnnnnnnnn--gagcgattttgcaccctatcttttgccaactgtgtt 290  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||||||| ||||          ||||||||||||||||||||||||||||||||||||    
T  1834 ttaattgcacttttccccctatcttttgtttattgtgcgattttgcacctcctcttttctttttgagcgattttgcaccctatcttttgccaactgtgtt 1735  T
Q  291 ttgt 294  Q
    ||||    
T  1734 ttgt 1731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1221; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 1511 - 1564
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||||| ||||||||||  ||||||| |||||||||||||    
T  1511 ggcttaattgcactttttcctctatcttttgccaattgtgtgattttgcacccc 1564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 3e-48; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 18242024 - 18242138
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18242024 tataagtgagggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 18242123  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  18242124 gatggggtgcaaaat 18242138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 369 - 473
Target Start/End: Original strand, 3403867 - 3403971
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3403867 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 3403966  T
Q  469 aaaat 473  Q
    |||||    
T  3403967 aaaat 3403971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 369 - 473
Target Start/End: Original strand, 30388242 - 30388346
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||    
T  30388242 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggtaaaaagatggggtgc 30388341  T
Q  469 aaaat 473  Q
    |||||    
T  30388342 aaaat 30388346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 368 - 473
Target Start/End: Complemental strand, 2762660 - 2762555
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtg 467  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  2762660 gggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcaaaaagggggcaaaaagatgaggtg 2762561  T
Q  468 caaaat 473  Q
    ||||||    
T  2762560 caaaat 2762555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 10039844 - 10039918
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 442  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10039844 gggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 10039918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 368 - 473
Target Start/End: Original strand, 13579529 - 13579634
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtg 467  Q
    ||||||| ||| |||||||||||  ||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||  ||||||||    
T  13579529 gggtgcagaattgcacaattagcaaaaatatagggggcaaaagtgcaattgaacacaaatatggggtgcaaaataagaaaggggccaaaaaaatggggtg 13579628  T
Q  468 caaaat 473  Q
    ||||||    
T  13579629 caaaat 13579634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 33971994 - 33972098
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgca-cccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgt 289  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||        ||||||||||||||||||||||||||||| |||||    
T  33971994 ggcttaattgcagtttttcccctatcttttgttaattgtacgattttgcaccccctcttatttttgagcgattttgcaccctatcttttgccaattgtgt 33972093  T
Q  290 tttgt 294  Q
    |||||    
T  33972094 tttgt 33972098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 11656657 - 11656583
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 442  Q
    ||||||||||||||||||||| |  || |||| ||||||||||||||||||||||||||||||||||||||||||    
T  11656657 gggtgcaaaatcgcacaattatcaaaacgatagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 11656583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 18241854 - 18241960
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc-tcnnnnnnnn-gagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||||||    
T  18241854 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctcttttgttttgagcgattttgcaccctatcttttgccaactgt 18241953  T
Q  288 gttttgt 294  Q
    |||||||    
T  18241954 gttttgt 18241960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 23250592 - 23250694
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgca-cccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgt 289  Q
    |||||||||||| ||||||||||||||||||| ||||||| ||| ||||| ||||||        |||||||||||| |||||||||||||||| |||||    
T  23250592 ggcttaattgcactttttcccctatcttttgtcaattgtgagatcttgcaccccctcttttttttgagcgattttgcgccctatcttttgccaattgtgt 23250691  T
Q  290 ttt 292  Q
    |||    
T  23250692 ttt 23250694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 366 - 427
Target Start/End: Original strand, 33972188 - 33972249
Alignment:
Q  366 gagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaag 427  Q
    |||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||||||    
T  33972188 gagggtgcaaaatctcacaattagcaaaaagatatggggcaaaagtgcaattgaacacaaag 33972249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 10039676 - 10039731
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccctc 246  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  10039676 ggcttaattgcacttttccccctatcttttgctaattgtgcgattttgcacccctc 10039731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 11656836 - 11656730
Alignment:
Q  191 ggcttaattgcattttt-tcccctatcttttgttaattgtgcgattttgca-cccctc-nnnnnnnngagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||||| |||| || ||||||||||| |||||||||||||||||| ||||||         |||||||||||||||| |||||||||||| |||    
T  11656836 ggcttaattgcacttttctctcctatcttttgctaattgtgcgattttgcaccccctctttatttttgagcgattttgcaccccatcttttgccaattgt 11656737  T
Q  288 gttttgt 294  Q
    |||||||    
T  11656736 gttttgt 11656730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 31598778 - 31598732
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgca 240  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||    
T  31598778 ttaattgcacttttccccctatcttttgttaattgtgcgattttgca 31598732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 21031979 - 21032032
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||| |||||| ||||||||||||||||||||||    
T  21031979 ggcttaattgcacttttccccctaacttttgctaattgtgcgattttgcacccc 21032032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 30388062 - 30388166
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgca-cccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgt 289  Q
    |||||||||||| |||  ||||||||||||| |||||||||||||||||| || |||        |||||||||||||||| |||||||| ||| | |||    
T  30388062 ggcttaattgcactttcccccctatcttttgctaattgtgcgattttgcagcctctcttttttttgagcgattttgcaccccatcttttgtcaattatgt 30388161  T
Q  290 tttgt 294  Q
    |||||    
T  30388162 tttgt 30388166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 31598326 - 31598274
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcaccc 243  Q
    |||||||||| |||||| || |||||||||| |||||||||||||||||||||    
T  31598326 ggcttaattgtatttttccctctatcttttgctaattgtgcgattttgcaccc 31598274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 3403717 - 3403771
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||    
T  3403717 ggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcacccc 3403771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 3404043 - 3403989
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||    
T  3404043 ggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcacccc 3403989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 3825530 - 3825580
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||| |||| ||||||| ||||| ||||||||||||||||||||||    
T  3825530 ttaattgcacttttccccctatattttgctaattgtgcgattttgcacccc 3825580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 18242210 - 18242156
Alignment:
Q  191 ggcttaattgcattttttc-ccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||||||||||  ||||||||||||  |||||||||||||||||||||    
T  18242210 ggcttaattgcattttttttccctatcttttgccaattgtgcgattttgcacccc 18242156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 367 - 425
Target Start/End: Complemental strand, 33658618 - 33658560
Alignment:
Q  367 agggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaa 425  Q
    |||||||||||| |||||||| ||  |||||||| |||||||||||||||| |||||||    
T  33658618 agggtgcaaaattgcacaattggcaaaaagataaagggcaaaagtgcaattaaacacaa 33658560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 13579704 - 13579651
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  ||||||| |||| ||||||||||||||||||||||    
T  13579704 ggcttaattgcacttttctccctatcgtttgctaattgtgcgattttgcacccc 13579651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 21032334 - 21032285
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgc 239  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||||||    
T  21032334 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgc 21032285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 30388403 - 30388362
Alignment:
Q  203 ttttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  30388403 tttttccccctatcttttgctaattgtgcgattttgcacccc 30388362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 12714450 - 12714481
Alignment:
Q  209 cccctatcttttgttaattgtgcgattttgca 240  Q
    ||||||||||||||||||||||||||||||||    
T  12714450 cccctatcttttgttaattgtgcgattttgca 12714481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 33828990 - 33829044
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  33828990 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 33829044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 33829690 - 33829636
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  33829690 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 33829636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 3403770 - 3403722
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    |||||||||||||||||||||||  ||||||| |||| ||||||||||||    
T  3403770 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 3403722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 3403990 - 3404038
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    |||||||||||||||||||||||  ||||||| |||| ||||||||||||    
T  3403990 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 3404038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 23250821 - 23250772
Alignment:
Q  194 ttaattgcattttttcccctatcttttg-ttaattgtgcgattttgcacc 242  Q
    ||||||||| |||| ||||||| ||||| |||||||||||||||||||||    
T  23250821 ttaattgcacttttacccctatattttggttaattgtgcgattttgcacc 23250772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 23250945 - 23250892
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||| |||||| ||||| |||||||||||| ||||||||||| |||| |||||    
T  23250945 ggcttgattgcactttttgccctatcttttgctaattgtgcgaatttgtacccc 23250892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 33655168 - 33655115
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| || | ||| ||||||||| ||||||||| ||||||||||||    
T  33655168 ggcttaattgcacttgtccccttatcttttgctaattgtgcaattttgcacccc 33655115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 3e-48; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 359 - 473
Target Start/End: Complemental strand, 25115943 - 25115829
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25115943 tataagtgagggtgcaaaatcgcacaattagcaaaatgataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 25115844  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  25115843 gatggggtgcaaaat 25115829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 359 - 473
Target Start/End: Complemental strand, 25175035 - 25174921
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25175035 tataagtgagggtgcaaaatcgcacaattagcaaaatgataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 25174936  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  25174935 gatggggtgcaaaat 25174921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 369 - 473
Target Start/End: Complemental strand, 18433191 - 18433087
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18433191 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 18433092  T
Q  469 aaaat 473  Q
    |||||    
T  18433091 aaaat 18433087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 370 - 473
Target Start/End: Complemental strand, 34577040 - 34576937
Alignment:
Q  370 gtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgca 469  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  34577040 gtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattaaacacaaagatggggtggaaaatcagaaagggggcaaaaagatggggtgca 34576941  T
Q  470 aaat 473  Q
    ||||    
T  34576940 aaat 34576937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 370 - 473
Target Start/End: Complemental strand, 26020625 - 26020522
Alignment:
Q  370 gtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgca 469  Q
    ||||||||||||||||||| |  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  26020625 gtgcaaaatcgcacaattaacaaaaagataagggacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatgcggtgca 26020526  T
Q  470 aaat 473  Q
    ||||    
T  26020525 aaat 26020522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 368 - 493
Target Start/End: Complemental strand, 5187699 - 5187574
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtg 467  Q
    |||| |||||||||| |||||||  ||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  5187699 gggtacaaaatcgcataattagcaaaaagataggggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaaggggacaaaaagatggggtg 5187600  T
Q  468 caaaattgcacaattggcaaaaaata 493  Q
    |||||| |||| ||| ||||||||||    
T  5187599 caaaatcgcacgattagcaaaaaata 5187574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 371 - 489
Target Start/End: Complemental strand, 9665700 - 9665582
Alignment:
Q  371 tgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgcaa 470  Q
    |||| |||||||||||||||  ||||||| |||||||||   |||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  9665700 tgcagaatcgcacaattagcaaaaagatagggggcaaaaacacaattgaacacaaagatgaggtgcaaaatcagaaagggagcaaaaagatggggtgcaa 9665601  T
Q  471 aattgcacaattggcaaaa 489  Q
    |||||||||||| ||||||    
T  9665600 aattgcacaattagcaaaa 9665582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 404 - 489
Target Start/End: Original strand, 22429138 - 22429223
Alignment:
Q  404 gcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgcaaaattgcacaattggcaaaa 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||    
T  22429138 gcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgcaaaatcgcacaattagcaaaa 22429223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 25175205 - 25175099
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc-tcnnnnnnnn-gagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||||||    
T  25175205 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatcttttgccaactgt 25175106  T
Q  288 gttttgt 294  Q
    |||||||    
T  25175105 gttttgt 25175099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 34577217 - 34577113
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc-tcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgt 289  Q
    |||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||        |||||||||||||||| |||||||| ||| |||||    
T  34577217 ggcttaattgcactttttcccctatcttttgctaattgtgtgattttgcaccccatcttttttttgagcgattttgcaccccatcttttgtcaattgtgt 34577118  T
Q  290 tttgt 294  Q
    |||||    
T  34577117 tttgt 34577113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 25116115 - 25116007
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccctcnnnnnnnn----gagcgattttgcaccctatcttttgccaact 285  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||||||||||| |            |||||||||||||||||||||||||||||||    
T  25116115 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccccttctttttttttgagcgattttgcaccctatcttttgccaact 25116016  T
Q  286 gtgttttgt 294  Q
    |||||||||    
T  25116015 gtgttttgt 25116007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 371 - 473
Target Start/End: Original strand, 5779742 - 5779844
Alignment:
Q  371 tgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgcaa 470  Q
    ||||||||||||||||||||  ||||||| | | |||||||||||||||||||||| ||| | ||||||||||||||| ||  |||| |||||  |||||    
T  5779742 tgcaaaatcgcacaattagcaaaaagataggagacaaaagtgcaattgaacacaaaaatgagatgcaaaatcagaaagaggaaaaaaagatggaatgcaa 5779841  T
Q  471 aat 473  Q
    |||    
T  5779842 aat 5779844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 18433370 - 18433265
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgca-cccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtg 288  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||||||| ||||||        |||||||||||||||| |||||||| ||| ||||    
T  18433370 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctcttttttttgagcgattttgcaccccatcttttgtcaattgtg 18433271  T
Q  289 ttttgt 294  Q
    ||||||    
T  18433270 ttttgt 18433265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 22429249 - 22429196
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  22429249 ggcttaattgcatttttccccctatcttttgctaattgtgcgattttgcacccc 22429196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 22428934 - 22429037
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgtt 290  Q
    |||||||||||| |||  ||||||||||||| ||||||||||||||||||||||          |||| ||||||||||| |||||||||||| ||||||    
T  22428934 ggcttaattgcactttcccccctatcttttgctaattgtgcgattttgcaccccatctttttttgagcaattttgcaccccatcttttgccaattgtgtt 22429033  T
Q  291 ttgt 294  Q
    ||||    
T  22429034 ttgt 22429037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 23011432 - 23011383
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcaccc 243  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  23011432 ttaattgcactttttcccttatcttttgttaattgtgcgattttgcaccc 23011383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 41382896 - 41382945
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcaccc 243  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  41382896 ttaattgcattttcccccctatcttttgttaattgtgcgattttgcaccc 41382945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 23011079 - 23011131
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcaccc 243  Q
    ||||||||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  23011079 ggcttaattgcatttttccccttatcttttgctaattgtgcgattttgcaccc 23011131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 33324892 - 33324838
Alignment:
Q  191 ggcttaattgca-ttttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  33324892 ggcttaattgcacttttttcccctatcttttgtcaattgtgtgattttgcacccc 33324838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 31569910 - 31569958
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacc 242  Q
    ||||||||| |||| |||||||||||||| |||||||||||||||||||    
T  31569910 ttaattgcacttttccccctatcttttgtcaattgtgcgattttgcacc 31569958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 12441042 - 12441093
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacc 242  Q
    |||||||||||| ||||| ||||||||||| |||||||||| ||||||||||    
T  12441042 ggcttaattgcacttttttccctatcttttattaattgtgcaattttgcacc 12441093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 5187884 - 5187830
Alignment:
Q  191 ggcttaattgcattttttcccct-atcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| ||||| |||||||||||||||||| ||||||||||||    
T  5187884 ggcttaattgcacttttgccccttatcttttgttaattgtgcaattttgcacccc 5187830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 18433015 - 18433069
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||    
T  18433015 ggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcacccc 18433069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 18816952 - 18817006
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||||||||  |||||||||||||  |||||||||||||||||||||    
T  18816952 ggcttaattgcatttttcacccctatcttttgccaattgtgcgattttgcacccc 18817006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 371 - 425
Target Start/End: Original strand, 23011261 - 23011315
Alignment:
Q  371 tgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaa 425  Q
    ||||||||||||||||| ||| ||||||| ||||||||| ||||||| |||||||    
T  23011261 tgcaaaatcgcacaattggctaaaagatagggggcaaaattgcaattaaacacaa 23011315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 26020450 - 26020504
Alignment:
Q  191 ggcttaattgcattttttc-ccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| | |||||||||||| ||||||||||||||||||||||    
T  26020450 ggcttaattgcacttttcctccctatcttttgctaattgtgcgattttgcacccc 26020504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 41383220 - 41383166
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccct 245  Q
    |||||||||| | |||| ||||||| ||||| |||||||||||||||||||||||    
T  41383220 ggcttaattgaacttttccccctattttttgctaattgtgcgattttgcacccct 41383166  T

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Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 25940521 - 25940574
Alignment:
Q  191 ggcttaattgcatttt-ttcccctatcttttgttaattgtgcgattttgcaccc 243  Q
    |||||||||||||||| |||||||||  ||||| ||||||||||||||||||||    
T  25940521 ggcttaattgcatttttttcccctatagtttgtcaattgtgcgattttgcaccc 25940574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 9665570 - 9665609
Alignment:
Q  205 ttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  9665570 ttttcccctatcttttgctaattgtgcaattttgcacccc 9665609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 43464245 - 43464194
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacc 242  Q
    |||||||||||| |||| |||||||  ||||| |||||||||||||||||||    
T  43464245 ggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacc 43464194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 18817665 - 18817611
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  18817665 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 18817611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 22729008 - 22729058
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcac 241  Q
    |||||||||||| |||| |||||||  ||||| ||||||||||||||||||    
T  22729008 ggcttaattgcacttttccccctatagtttgtaaattgtgcgattttgcac 22729058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 34576870 - 34576920
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||| |||  ||||||||||||| ||||||||||||||| ||||||    
T  34576870 ttaattgcactttcccccctatcttttgctaattgtgcgattttacacccc 34576920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 5187831 - 5187879
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    ||||||||||| ||||||||| |  |||||||||||||||||||||||||    
T  5187831 gggtgcaaaattgcacaattaaca-aaagataaggggcaaaagtgcaatt 5187879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 12441196 - 12441249
Alignment:
Q  373 caaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaa 426  Q
    |||||||||||||||  |  ||||||| ||||||||||||||||| ||||||||    
T  12441196 caaaatcgcacaattgacaaaaagatagggggcaaaagtgcaattaaacacaaa 12441249  T

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Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 12441364 - 12441320
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattt 236  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||||    
T  12441364 ggcttaattgcactttt-cccctatcttttgctaattgtgcgattt 12441320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 18433068 - 18433020
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    |||||||||||||||||||||||  ||||||| |||| ||||||||||||    
T  18433068 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 18433020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 3e-48; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 20968888 - 20969002
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    ||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  20968888 tataagtgagggtgcaaaatcgcacaattagcaaaatgataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 20968987  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  20968988 gatggggtgcaaaat 20969002  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 359 - 473
Target Start/End: Complemental strand, 10293793 - 10293680
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  10293793 tataagtgagggtgcaaaatcgcacaattaacaaaaagataaggggcaaaagtgcaattgaacacaaagat-gggtgcaaaatcagaaagggggcaaaaa 10293695  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  10293694 gatggggtgcaaaat 10293680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 369 - 473
Target Start/End: Complemental strand, 18875065 - 18874961
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18875065 ggtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 18874966  T
Q  469 aaaat 473  Q
    |||||    
T  18874965 aaaat 18874961  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 370 - 473
Target Start/End: Complemental strand, 9026907 - 9026805
Alignment:
Q  370 gtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgca 469  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| |||| |||||||||||    
T  9026907 gtgcaaaatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagacggggggcaaaatcagaaaggggg-aaaaagatggggtgca 9026809  T
Q  470 aaat 473  Q
    ||||    
T  9026808 aaat 9026805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 10293963 - 10293857
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc-tcnnnnnnnn-gagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||||||    
T  10293963 ggcttaattgcacttttcccccctatcttttgttaattgtgcgattttgcaccccctcttttgttttgagcgattttgcaccctatcttttgccaactgt 10293864  T
Q  288 gttttgt 294  Q
    |||||||    
T  10293863 gttttgt 10293857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 209 - 294
Target Start/End: Original strand, 20968737 - 20968824
Alignment:
Q  209 cccctatcttttgttaattgtgcgattttgcacccc-tcnnnnnnnn-gagcgattttgcaccctatcttttgccaactgtgttttgt 294  Q
    |||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||||||||||||||||||||||||||    
T  20968737 cccctatcttttgttaattgtgcgattttgcaccccctctttttttttgagcgattttgcaccctatcttttgccaactgtgttttgt 20968824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 3644721 - 3644795
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 442  Q
    |||||||||||||||||||||||   | ||||  |||||||||||||||| ||||||||||||||||||||||||    
T  3644721 gggtgcaaaatcgcacaattagcaagaggatagagggcaaaagtgcaattaaacacaaagatggggtgcaaaatc 3644795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 21896564 - 21896511
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  21896564 ggcttaattgcattttttcccctatattttgtcaattgtgcgattttgcacccc 21896511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 47870823 - 47870926
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcg-attttgcacccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgt 289  Q
    |||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||         |||||||||||||||| |||||||||||| |||||    
T  47870823 ggcttaattgcactttttcccctatcttttgctaattatgcgaattttgcacccct-ttttttttgagcgattttgcaccccatcttttgccaattgtgt 47870921  T
Q  290 tttgt 294  Q
    |||||    
T  47870922 tttgt 47870926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 10293608 - 10293662
Alignment:
Q  191 ggcttaattgcatttt-ttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  10293608 ggcttaattgcatttttttcccctatcttttgtcaattgtgcgattttgcacccc 10293662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 47871175 - 47871122
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  47871175 ggcttaattgcacttttccccctatcttttgctaattgtgcgattttgcacccc 47871122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 278
Target Start/End: Original strand, 9026739 - 9026823
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccctcnnnnnnnngagcgattttgcaccctatctttt 278  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||||||||         |||||||||||||||| |||||||    
T  9026739 ttaattgcatttttcctcctatcttttgttaattgtgcaattttgcacccctttattttttgagcgattttgcaccccatctttt 9026823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 3644837 - 3644783
Alignment:
Q  191 ggcttaattgcattttttcccct-atcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  3644837 ggcttaattgcatttttcccccttattttttgttaattgtgcgattttgcacccc 3644783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 10771504 - 10771550
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgatttt 237  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  10771504 ggcttaattgcatttttttccctatcttttgtcaattgtgcgatttt 10771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 17441117 - 17441066
Alignment:
Q  191 ggcttaattgcattttttccc-ctatcttttgttaattgtgcgattttgcac 241  Q
    ||||||||||||||||| | | ||||||||||||||||||||||||||||||    
T  17441117 ggcttaattgcatttttcctctctatcttttgttaattgtgcgattttgcac 17441066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 3353128 - 3353181
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||||  ||||| |||||||||||||||||||||    
T  3353128 ggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 3353181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 8314013 - 8314066
Alignment:
Q  191 ggcttaattgcattttt-tcccctatcttttgttaattgtgcgattttgcaccc 243  Q
    |||||||||||| |||| |||||||| |||||| ||||||||||||||||||||    
T  8314013 ggcttaattgcacttttctcccctatattttgtcaattgtgcgattttgcaccc 8314066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 425
Target Start/End: Original strand, 13657622 - 13657679
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaa 425  Q
    |||||||||||||||||||| ||  ||||||| ||| ||||||||||||| |||||||    
T  13657622 gggtgcaaaatcgcacaattggcaaaaagataggggacaaaagtgcaattaaacacaa 13657679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 17372298 - 17372403
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgca-cccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtg 288  Q
    ||||||||||||  |||||||| ||| ||||| |||||||||||||||||| |||||         |||||||||||||||| |||||||||||| |||     
T  17372298 ggcttaattgcaccttttccccctattttttgctaattgtgcgattttgcaccccctgttttttttgagcgattttgcaccccatcttttgccaattgta 17372397  T
Q  289 ttttgt 294  Q
    ||||||    
T  17372398 ttttgt 17372403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 18874882 - 18874935
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcaccc 243  Q
    |||| ||||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  18874882 ggctcaattgcactttttccccctatcttttgctaattgtgcgattttgcaccc 18874935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 23630086 - 23630033
Alignment:
Q  194 ttaattgcattttttcc-cctatcttttgttaattgtgcgattttgcacccctc 246  Q
    ||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||    
T  23630086 ttaattgcactttttcctcctattttttggtaattgtgcgattttgcacccctc 23630033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 26007182 - 26007235
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||||||||  |||||||  ||||| |||||||||||||||||||||    
T  26007182 ggcttaattgcattttcccccctatagtttgtcaattgtgcgattttgcacccc 26007235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 42673349 - 42673296
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||||  ||||| |||||||||||||||||||||    
T  42673349 ggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 42673296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 426
Target Start/End: Original strand, 45060774 - 45060830
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaa 426  Q
    |||||||||||| |||||| ||  ||||||| ||||||||||||||||||||||||||    
T  45060774 ggtgcaaaatcgaacaattggcaaaaagata-ggggcaaaagtgcaattgaacacaaa 45060830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 370 - 426
Target Start/End: Complemental strand, 4947433 - 4947377
Alignment:
Q  370 gtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaa 426  Q
    |||||||||||||||||| ||  |||||||  |||||||||||||||||| ||||||    
T  4947433 gtgcaaaatcgcacaattggcaaaaagatagagggcaaaagtgcaattgagcacaaa 4947377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 8315135 - 8315083
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcaccc 243  Q
    |||||||||||| |||  ||||||| |||||| ||||||||||||||||||||    
T  8315135 ggcttaattgcactttcccccctatattttgtcaattgtgcgattttgcaccc 8315083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 9027086 - 9026982
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc-tcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgt 289  Q
    ||||||||| || |||| ||||||||||||| ||||||||| ||||| |||||| |         ||| |||||||||||| |||||||||||| |||||    
T  9027086 ggcttaatttcacttttccccctatcttttgctaattgtgcaattttacaccccttgttttttttgagtgattttgcaccccatcttttgccaattgtgt 9026987  T
Q  290 tttgt 294  Q
    |||||    
T  9026986 tttgt 9026982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 18874936 - 18874885
Alignment:
Q  367 agggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattga 419  Q
    ||||||||||||||||||||||||  ||||||| |||| ||||||||||||||    
T  18874936 agggtgcaaaatcgcacaattagc-aaaagatagggggaaaaagtgcaattga 18874885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 1101141 - 1101090
Alignment:
Q  194 ttaattgcattttttcccctatctttt-gttaattgtgcgattttgcacccc 244  Q
    ||||||||| |||| |||||||||||| || |||||||||||||||||||||    
T  1101141 ttaattgcacttttgcccctatctttttgtcaattgtgcgattttgcacccc 1101090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 13657513 - 13657552
Alignment:
Q  255 gagcgattttgcaccctatcttttgccaactgtgttttgt 294  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  13657513 gagcgattttgcaccccatcttttgccaattgtgttttgt 13657552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 20969073 - 20969018
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccct 245  Q
    |||||||||||| |||| |||| |||||||||  ||||||||||||||||||||||    
T  20969073 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccct 20969018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 517
Target Start/End: Complemental strand, 21895736 - 21895657
Alignment:
Q  437 aaaatcagaaagggggcaaaaggatggggtgcaaaattgcacaattggcaaaaaatannnnnnnaaaagtgcaattaagcc 517  Q
    |||||||||||||||  ||||| ||||||||||||||  |||||||||||||| |||       |||||||||||||||||    
T  21895736 aaaatcagaaaggggaaaaaag-atggggtgcaaaatcacacaattggcaaaacatagtggggaaaaagtgcaattaagcc 21895657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 26540856 - 26540817
Alignment:
Q  255 gagcgattttgcaccctatcttttgccaactgtgttttgt 294  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  26540856 gagcgattttgcaccccatcttttgccaattgtgttttgt 26540817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 42627599 - 42627544
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccctc 246  Q
    |||||||||||| |||| || |||||||||| |||||||| ||||||||| |||||    
T  42627599 ggcttaattgcacttttccctctatcttttgctaattgtgtgattttgcatccctc 42627544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 1101091 - 1101148
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaa 426  Q
    ||||||||||||||||||||  |  ||||||| ||||||||||||||||| ||||||||    
T  1101091 gggtgcaaaatcgcacaattgacaaaaagata-ggggcaaaagtgcaattaaacacaaa 1101148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 1928484 - 1928434
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||||   ||||||||||||  |||||||||||||||||||||    
T  1928484 ttaattgcattttcctccctatcttttgccaattgtgcgattttgcacccc 1928434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 4947278 - 4947312
Alignment:
Q  209 cccctatcttttgttaattgtgcgattttgcaccc 243  Q
    ||||||| |||||||||||||||||||||||||||    
T  4947278 cccctattttttgttaattgtgcgattttgcaccc 4947312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 14016014 - 14015964
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||| ||||   ||||||||||| ||||||||||||||||||||||    
T  14016014 ttaattgcacttttcatcctatcttttgctaattgtgcgattttgcacccc 14015964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 18875245 - 18875191
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| ||||||||| ||||||| ||||||||||||||    
T  18875245 ggcttaattgcacttttgccccctatcttttgctaattgtacgattttgcacccc 18875191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 26540694 - 26540744
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||| |||| ||||||| |||||| |||||||| ||||||||||||    
T  26540694 ttaattgcacttttgcccctattttttgtcaattgtgcaattttgcacccc 26540744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 28702278 - 28702328
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcac 241  Q
    ||||||||| || ||||||| ||||||||||| |||| |||||||||||||    
T  28702278 ggcttaatttcactttttcctctatcttttgtcaattatgcgattttgcac 28702328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 425
Target Start/End: Original strand, 17372474 - 17372531
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaa 425  Q
    |||||||||||||||||||| ||  ||||||| || |||||||||| ||| |||||||    
T  17372474 gggtgcaaaatcgcacaattggcaaaaagatagggtgcaaaagtgccattaaacacaa 17372531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 17372645 - 17372593
Alignment:
Q  192 gcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccct 245  Q
    ||||||||||| |||| ||||||| ||||  |||||||||||||||||||||||    
T  17372645 gcttaattgcactttt-cccctatattttactaattgtgcgattttgcacccct 17372593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 18875192 - 18875240
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    ||||||||||||| |||||||||  ||||||| |||||||||||||||||    
T  18875192 gggtgcaaaatcgtacaattagca-aaagatagggggcaaaagtgcaatt 18875240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 42672978 - 42673031
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||||  ||||  |||||||||||||||||||||    
T  42672978 ggcttaattgcacttttccccctatagtttgccaattgtgcgattttgcacccc 42673031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 45060925 - 45060872
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcaccc 243  Q
    |||||||||||| ||||  ||||||||||||| ||||||||||||||| |||||    
T  45060925 ggcttaattgcacttttcacccctatcttttgctaattgtgcgattttacaccc 45060872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 6e-46; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 9412193 - 9412307
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    |||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  9412193 tataagtgagggtgcaaaatcgcacagttagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatctgaaagggggcaaaaa 9412292  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  9412293 gatggggtgcaaaat 9412307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 359 - 473
Target Start/End: Original strand, 3687525 - 3687639
Alignment:
Q  359 tataagtgagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaag 458  Q
    |||||||||||||| |||||||||||||||||  ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3687525 tataagtgagggtgtaaaatcgcacaattagcaaaaaaataagggacaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaa 3687624  T
Q  459 gatggggtgcaaaat 473  Q
    |||||||||||||||    
T  3687625 gatggggtgcaaaat 3687639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 368 - 493
Target Start/End: Original strand, 6908391 - 6908515
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtg 467  Q
    |||||||||||||||||||||||  ||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||    
T  6908391 gggtgcaaaatcgcacaattagcaaaaagatagggggtaaaagcgcaattgaacacaaagatggggtgcaaaatcagaaaggaggcaaaaagat-gggtg 6908489  T
Q  468 caaaattgcacaattggcaaaaaata 493  Q
    |||||| |||||||| ||||||||||    
T  6908490 caaaatcgcacaattagcaaaaaata 6908515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 371 - 482
Target Start/End: Original strand, 35080132 - 35080243
Alignment:
Q  371 tgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgcaa 470  Q
    ||||||||||||||||||||| ||||||| ||||||||||  |||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||    
T  35080132 tgcaaaatcgcacaattagcttaaagatagggggcaaaagcacaattgaacacaaagatgaggtgcaaaatcagaaaggaggcaaaaagatggggtgcaa 35080231  T
Q  471 aattgcacaatt 482  Q
    ||| ||||||||    
T  35080232 aatcgcacaatt 35080243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 5349641 - 5349753
Alignment:
Q  370 gtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgca 469  Q
    ||||||||| |||||||  ||  ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||    
T  5349641 gtgcaaaattgcacaatatgcaaaaagatagggggcaaaagtgcaattgaatacaaagatggggtgcaaaatcagaaagggggtaaaaagatggggtgca 5349740  T
Q  470 aaattgcacaatt 482  Q
    |||| ||||||||    
T  5349741 aaatcgcacaatt 5349753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 369 - 457
Target Start/End: Original strand, 13772793 - 13772881
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaa 457  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||    
T  13772793 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgtaattgaacacaaagatggggtgaaaaattagaaagggtgcaaaa 13772881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 366 - 457
Target Start/End: Original strand, 15567164 - 15567255
Alignment:
Q  366 gagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaa 457  Q
    |||| ||||||||| ||||||||||  ||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15567164 gaggatgcaaaatcacacaattagcaaaaagagagggggcaaacgtgcaattgaacacaaagatggggtgcaaaatcagaaagggtgcaaaa 15567255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 369 - 457
Target Start/End: Complemental strand, 33628554 - 33628466
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaa 457  Q
    |||||||||| |||||||||||  ||||||| || ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  33628554 ggtgcaaaattgcacaattagcaaaaagatagggtgcaaatgtgcaattgaacacaaggatggggtgcaaaatcagaaagggtgcaaaa 33628466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 368 - 473
Target Start/End: Original strand, 34235856 - 34235961
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtg 467  Q
    |||||| |||||| |||||| |   ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| || || |||    
T  34235856 gggtgcgaaatcgaacaatttgaaaaaagatagggggcaaaagtgcaattaaacacaaagatggggtgcagaatcagaaatggggcaaaaagacggcgtg 34235955  T
Q  468 caaaat 473  Q
    ||||||    
T  34235956 caaaat 34235961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 3687353 - 3687461
Alignment:
Q  191 ggcttaattgcattttttcccc--tatcttttgttaattgtgcgattttgcacccc---tcnnnnnnnngagcgattttgcaccctatcttttgccaact 285  Q
    |||||||||||| |||| ||||  ||||||||||||||||||||||||||||||||   |         |||||||||||||||||||||||||||||||    
T  3687353 ggcttaattgcacttttccccccctatcttttgttaattgtgcgattttgcaccccctcttttttttttgagcgattttgcaccctatcttttgccaact 3687452  T
Q  286 gtgttttgt 294  Q
    |||||||||    
T  3687453 gtgttttgt 3687461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 9412023 - 9412129
Alignment:
Q  191 ggcttaattgcattttttcccct-atcttttgttaattgtgcgattttgca-cccctc-nnnnnnnngagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||         |||||||||| ||||||||||||||||||||||    
T  9412023 ggcttaattgcacttttcccccttatcttttgttaattgtgcgattttgcaccccctctttttttttgagcgattttccaccctatcttttgccaactgt 9412122  T
Q  288 gttttgt 294  Q
    |||||||    
T  9412123 gttttgt 9412129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 23686771 - 23686667
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccctc-nnnnnnnngagcgattttgcaccctatcttttgccaactgtg 288  Q
    |||||||||||| ||||||||| ||||||||| |||||||||||||||| |||||||         |||||||||||||||| |||||||||||| ||||    
T  23686771 ggcttaattgcactttttccccctatcttttgctaattgtgcgattttg-acccctcttttttttggagcgattttgcaccccatcttttgccaaatgtg 23686673  T
Q  289 ttttgt 294  Q
    ||||||    
T  23686672 ttttgt 23686667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 38191619 - 38191566
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcaccc 243  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  38191619 ggcttaattgcattttttacccctatcttttgttaattatgcgattttgcaccc 38191566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 6908213 - 6908265
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcaccc 243  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||||||||    
T  6908213 ggcttaattgcacttttccccctatctattgttaattgtgcgattttgcaccc 6908265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 8953941 - 8953889
Alignment:
Q  192 gcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  8953941 gcttaattgcacttttccccctatcttttgttaattgtgcaattttgcacccc 8953889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 5349771 - 5349733
Alignment:
Q  206 tttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5349771 tttcccctatcttttgttaattgtgcgattttgcacccc 5349733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 13863313 - 13863367
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||||||||  |||||||||||||  |||||||||||||||||||||    
T  13863313 ggcttaattgcatttttcacccctatcttttgccaattgtgcgattttgcacccc 13863367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 294
Target Start/End: Complemental strand, 27096392 - 27096290
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgca-cccctc-nnnnnnnngagcgattttgcaccctatcttttgccaactgtgttt 291  Q
    ||||||||| |||| |||||||||||||| ||||||| ||||||||| ||||||         |||||||||||||||| || ||||||||| |||||||    
T  27096392 ttaattgcacttttccccctatcttttgtcaattgtgtgattttgcatcccctcttcttttttgagcgattttgcaccccatattttgccaattgtgttt 27096293  T
Q  292 tgt 294  Q
    |||    
T  27096292 tgt 27096290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 27181911 - 27182013
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgca-cccctc-nnnnnnnngagcgattttgcaccctatcttttgccaactgtgttt 291  Q
    ||||||||| |||| |||||||||||||| ||||||| ||||||||| ||||||         |||||||||||||||| || ||||||||| |||||||    
T  27181911 ttaattgcacttttccccctatcttttgtcaattgtgtgattttgcatcccctcttcttttttgagcgattttgcaccccatattttgccaattgtgttt 27182010  T
Q  292 tgt 294  Q
    |||    
T  27182011 tgt 27182013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 36527387 - 36527437
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||| ||||||||||||  ||||| |||||||||||||||||||||    
T  36527387 ttaattgcactttttcccctatagtttgtcaattgtgcgattttgcacccc 36527437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 13744286 - 13744233
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||||  ||||| |||||||||||||||||||||    
T  13744286 ggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 13744233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 48359320 - 48359373
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||||  ||||| |||||||||||||||||||||    
T  48359320 ggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 48359373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 23686421 - 23686473
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcaccc 243  Q
    |||||||||||| |||| ||||||||||||| ||||||| | |||||||||||    
T  23686421 ggcttaattgcacttttccccctatcttttgctaattgtacaattttgcaccc 23686473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 29291808 - 29291860
Alignment:
Q  193 cttaattgcattttttc-ccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||| |||||| |||||||||||| ||||| ||||||||||||||||    
T  29291808 cttaattgcactttttctccctatcttttgataattatgcgattttgcacccc 29291860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 35079960 - 35080012
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcaccc 243  Q
    |||||||||||| |||| ||||||||||||| |||||||| | ||||||||||    
T  35079960 ggcttaattgcacttttccccctatcttttgctaattgtggggttttgcaccc 35080012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 35080263 - 35080223
Alignment:
Q  205 ttttcccct-atcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  35080263 ttttccccttatcttttgttaattgtgcgattttgcacccc 35080223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 430 - 473
Target Start/End: Original strand, 29291982 - 29292025
Alignment:
Q  430 ggggtgcaaaatcagaaagggggcaaaaggatggggtgcaaaat 473  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||    
T  29291982 ggggtgcaaaatcagaaatggggcaaaaagatagggtgcaaaat 29292025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 3687710 - 3687656
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| |||||||||  |||||||||||||||||||||    
T  3687710 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 3687656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 5735253 - 5735303
Alignment:
Q  192 gcttaattgcattttt-tcccctatcttttgttaattgtgcgattttgcac 241  Q
    ||||||||||| |||| |||||||||||| | |||||||||||||||||||    
T  5735253 gcttaattgcacttttctcccctatctttggctaattgtgcgattttgcac 5735303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 6908280 - 6908318
Alignment:
Q  256 agcgattttgcaccctatcttttgccaactgtgttttgt 294  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  6908280 agcgattttgcactctatcttttgccaattgtgttttgt 6908318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 9412379 - 9412325
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| |||||||||  |||||||||||||||||||||    
T  9412379 ggcttaattgcacttttcccccctatcttttgccaattgtgcgattttgcacccc 9412325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 13772641 - 13772695
Alignment:
Q  191 ggcttaattgcattttttc-ccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| | |||||||||||| |||||||| |||||||||||||    
T  13772641 ggcttaattgcacttttcctccctatcttttgctaattgtgtgattttgcacccc 13772695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 13772955 - 13772901
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| |||| |||| ||||||||||||||||||||||    
T  13772955 ggcttaattgcacttttcccccctatcatttgctaattgtgcgattttgcacccc 13772901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 22740641 - 22740591
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||| |||| |||||||  ||||| |||||||||||||||||||||    
T  22740641 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcacccc 22740591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 29292095 - 29292041
Alignment:
Q  191 ggcttaattgca-ttttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||||||| ||| |||||| ||||||||||||||| ||||||    
T  29292095 ggcttaattgcacttttttcctctaacttttgctaattgtgcgattttccacccc 29292041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 33628714 - 33628660
Alignment:
Q  191 ggcttaattgcattttttccc-ctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||| ||||||| |||||||| |||||||||  ||||||||||||||||||||||    
T  33628714 ggctaaattgcactttttccctctatcttttactaattgtgcgattttgcacccc 33628660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 44599489 - 44599543
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  44599489 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 44599543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 44600189 - 44600135
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||  |||||||||||||  |||||||||||||||||||||    
T  44600189 ggcttaattgcacttttcacccctatcttttgccaattgtgcgattttgcacccc 44600135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 5735598 - 5735553
Alignment:
Q  194 ttaattgcattttttcccc-tatcttttgttaattgtgcgattttg 238  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||||    
T  5735598 ttaattgcactttttccccctatcttttattaattgtgcgattttg 5735553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 6908534 - 6908485
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcaccc 243  Q
    ||||||||| |||  ||||||| ||||| |||||||||||||||||||||    
T  6908534 ttaattgcactttcccccctattttttgctaattgtgcgattttgcaccc 6908485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 9412076 - 9412028
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    ||||||||||||||||||||| |  |||||||||||| ||||||||||||    
T  9412076 gggtgcaaaatcgcacaattaaca-aaagataagggggaaaagtgcaatt 9412028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 18925230 - 18925279
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    |||||||||||||||||||| ||  ||||||| ||||||||||| |||||    
T  18925230 gggtgcaaaatcgcacaattggcaaaaagatagggggcaaaagttcaatt 18925279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 93; Significance: 1e-44; HSPs: 4)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 369 - 473
Target Start/End: Original strand, 6575 - 6679
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6575 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaagatggggtgc 6674  T
Q  469 aaaat 473  Q
    |||||    
T  6675 aaaat 6679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 6750 - 6697
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  6750 ggcttaattgcacttttccccctatcttttgctaattgtgcgattttgcacccc 6697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 6394 - 6448
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||    
T  6394 ggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcacccc 6448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 6447 - 6399
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    |||||||||||||||||||||||  ||||||| |||| ||||||||||||    
T  6447 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 6399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 369 - 473
Target Start/End: Original strand, 25247 - 25351
Alignment:
Q  369 ggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgc 468  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  25247 ggtgcaaaatcgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaatggggcaaaaagatggggtgc 25346  T
Q  469 aaaat 473  Q
    |||||    
T  25347 aaaat 25351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 25423 - 25369
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||    
T  25423 ggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcacccc 25369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 25370 - 25418
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    |||||||||||||||||||||||  ||||||| |||| ||||||||||||    
T  25370 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 25418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 87; Significance: 4e-41; HSPs: 3)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 367 - 473
Target Start/End: Original strand, 45683 - 45789
Alignment:
Q  367 agggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggt 466  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  45683 agggtgcaaaatcgcacaattagcaaaaagataagggacaaaagtgcaattgaacacaaagatgaggtgcaaaatcagaaagggggcaaaaagatggggt 45782  T
Q  467 gcaaaat 473  Q
    |||||||    
T  45783 gcaaaat 45789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 45537 - 45642
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcac-ccctc-nnnnnnnngagcgattttgcaccctatcttttgccaactgtg 288  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||         ||||||||||||||||||||||||||||||||||    
T  45537 ggcttaattgcacttttccccctatcttttgttaattgtgcgattttgcactccctctttttttttgagcgattttgcaccctatcttttgccaactgtg 45636  T
Q  289 ttttgt 294  Q
    ||||||    
T  45637 ttttgt 45642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 45860 - 45807
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||||||||||  |||||||||||||||||||||    
T  45860 ggcttaattgcacttttccccctatcttttgccaattgtgcgattttgcacccc 45807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 376 - 473
Target Start/End: Complemental strand, 412090 - 411993
Alignment:
Q  376 aatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggtgcaaaat 473  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||    
T  412090 aatcgcacaattagcaaaaagatagggggcaaaagtgcaattgaacacaaagatagggtgcaaaatcagaaagggggcaaaaagatagggtgcaaaat 411993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 411923 - 411976
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||  |||||||||||||| |||||||||||||||||||||    
T  411923 ggcttaattgcactttaccccctatcttttgtcaattgtgcgattttgcacccc 411976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 368 - 466
Target Start/End: Original strand, 6752 - 6850
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatggggt 466  Q
    ||||||||||||  | |||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  6752 gggtgcaaaatcatagaattagcaaaaaaataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggagcaaaaagatggggt 6850  T

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Target: scaffold0598; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 209 - 294
Target Start/End: Original strand, 6626 - 6710
Alignment:
Q  209 cccctatcttttgttaattgtgcgattttgcacccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgttttgt 294  Q
    |||||||||||||||||||||| ||||||||||| |||         |||||||||||||||||||||||||||||||||||||||    
T  6626 cccctatcttttgttaattgtgtgattttgcacctctctttttttt-agcgattttgcaccctatcttttgccaactgtgttttgt 6710  T

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Target: scaffold0015 (Bit Score: 60; Significance: 5e-25; HSPs: 3)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 366 - 473
Target Start/End: Complemental strand, 17032 - 16925
Alignment:
Q  366 gagggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatcagaaagggggcaaaaggatgggg 465  Q
    ||||||||||||||| ||||||||   ||||||| ||| |||||||||||||||||| ||||| || |||||||||||||||||| | |||| |||||||    
T  17032 gagggtgcaaaatcgtacaattagagaaaagataggggacaaaagtgcaattgaacaaaaagacggagtgcaaaatcagaaagggaggaaaaagatgggg 16933  T
Q  466 tgcaaaat 473  Q
    ||||||||    
T  16932 tgcaaaat 16925  T

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Target: scaffold0015; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 17209 - 17103
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacc-cctc--nnnnnnnngagcgattttgcaccctatcttttgccaactgt 287  Q
    |||||||||||| |||| ||||||||||||| ||||||||| |||||||||| ||||          |||||||||||||||| |||||||||||| |||    
T  17209 ggcttaattgcacttttccccctatcttttgctaattgtgcaattttgcaccgcctcttttttttttgagcgattttgcaccccatcttttgccaattgt 17110  T
Q  288 gttttgt 294  Q
    |||||||    
T  17109 gttttgt 17103  T

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Target: scaffold0015; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 16853 - 16905
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    ||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||    
T  16853 ggcttaattgcctttt-tcccctatcttttgctaattgtgcgattatgcacccc 16905  T

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Target: scaffold0001 (Bit Score: 60; Significance: 5e-25; HSPs: 7)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 371 - 442
Target Start/End: Complemental strand, 439072 - 439001
Alignment:
Q  371 tgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 442  Q
    |||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  439072 tgcaaaattgcacaattagcaaaaagataaggggcaaaagtgcaattgaacacaaagatggggtgcaaaatc 439001  T

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Target: scaffold0001; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 439253 - 439151
Alignment:
Q  191 ggcttaattgcattttttcccct-atcttttgttaattgtgcgattttgcacccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgt 289  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||||||| |||          |||||||||||||||| |||||||| ||| |||||    
T  439253 ggcttaattgcactttttccccttatcttttgctaattgtgcgattttgcatcccctctttttttgagcgattttgcaccccatcttttgtcaattgtgt 439154  T
Q  290 ttt 292  Q
    |||    
T  439153 ttt 439151  T

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Target: scaffold0001; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 438930 - 438984
Alignment:
Q  191 ggcttaattgcattttttcccc-tatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||    
T  438930 ggcttaattgcacttttcccccctatcttttgctaattgtgcgattttgcacccc 438984  T

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Target: scaffold0001; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 183367 - 183416
Alignment:
Q  194 ttaattgcattttttcccctatcttttgttaattgtgcgattttgcaccc 243  Q
    ||||||||| |||| |||||||||||||| |||||| |||||||||||||    
T  183367 ttaattgcacttttccccctatcttttgtcaattgtacgattttgcaccc 183416  T

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Target: scaffold0001; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 425
Target Start/End: Original strand, 183544 - 183598
Alignment:
Q  371 tgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaattgaacacaa 425  Q
    ||||||||||||||||| |   ||||||| ||||||||||||||||| |||||||    
T  183544 tgcaaaatcgcacaattggtaaaaagatagggggcaaaagtgcaattaaacacaa 183598  T

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Target: scaffold0001; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 439203 - 439248
Alignment:
Q  371 tgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||    
T  439203 tgcaaaatcgcacaattagca-aaagataaggggaaaaagtgcaatt 439248  T

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Target: scaffold0001; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 438983 - 438935
Alignment:
Q  368 gggtgcaaaatcgcacaattagctgaaagataaggggcaaaagtgcaatt 417  Q
    |||||||||||||||||||||||  ||||||| |||| ||||||||||||    
T  438983 gggtgcaaaatcgcacaattagc-aaaagataggggggaaaagtgcaatt 438935  T

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Target: scaffold0009 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 205687 - 205790
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccctcnnnnnnnngagcgattttgcaccctatcttttgccaactgtgtt 290  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||||||||||          || ||||||||||||  |||||||||||| ||||||    
T  205687 ggcttaattgcatttttctccctatcttttgctaattgtgcgattttgcaccccctctttttttgaacgattttgcacctcatcttttgccaattgtgtt 205786  T
Q  291 ttgt 294  Q
    ||||    
T  205787 ttgt 205790  T

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Target: scaffold0376 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 7455 - 7508
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||||||||||||||||| ||||| ||||||||||||||||    
T  7455 ggcttaattgcactttttcccctatcttttgctaattatgcgattttgcacccc 7508  T

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Target: scaffold0376; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 7653 - 7600
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||| |||||    
T  7653 ggcttaattgcactttttcccctatcttttgctaattgtgcgattttgtacccc 7600  T

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Target: scaffold0328 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 6849 - 6795
Alignment:
Q  191 ggcttaattgcatttttt-cccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||||||||  |||||||||||||  |||||||||||||||||||||    
T  6849 ggcttaattgcatttttcacccctatcttttgccaattgtgcgattttgcacccc 6795  T

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Target: scaffold0460 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 816 - 763
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| ||||||||||||  ||||  |||||||||||||||||||||    
T  816 ggcttaattgcactttttcccctatagtttgccaattgtgcgattttgcacccc 763  T

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Target: scaffold0433 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 10690 - 10729
Alignment:
Q  255 gagcgattttgcaccctatcttttgccaactgtgttttgt 294  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  10690 gagcgattttgcaccccatcttttgccaattgtgttttgt 10729  T

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Target: scaffold0069 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 50560 - 50507
Alignment:
Q  191 ggcttaattgcattttttcccctatcttttgttaattgtgcgattttgcacccc 244  Q
    |||||||||||| |||| |||||||  ||||  |||||||||||||||||||||    
T  50560 ggcttaattgcacttttccccctatagtttgccaattgtgcgattttgcacccc 50507  T

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