View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4581-Insertion-3 (Length: 862)
Name: NF4581-Insertion-3
Description: NF4581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4581-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 747; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 747; E-Value: 0
Query Start/End: Original strand, 64 - 854
Target Start/End: Complemental strand, 48964973 - 48964183
Alignment:
| Q |
64 |
tctctgagtttgtgagaagctggtttttaattagtgttcagctatgatcttttcaaggatattaagggagtgataaataaatttttcttgtactttttgc |
163 |
Q |
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| T |
48964973 |
tctctgagtttgtgagaagctggtttttaattagtgttcagctatgatcttttcaaggatattaagggagtgataaataaatttttcttgtactttttgc |
48964874 |
T |
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| Q |
164 |
caagtttctttctttattcattcaagttttccactcaaatgaagtctgaaatcgttattcttcatcaaaatttcaaaaatcaagtcttagagaagaccac |
263 |
Q |
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| T |
48964873 |
caagtttctttctttattcattcaagttttccactcaaatgaagtctgaaatcgttattcttcatcaaaatttcaaaaatcaagtcttagagaagaccat |
48964774 |
T |
|
| Q |
264 |
tcatcctgataagtgataagcggacaaagttcaagtctttgcccccaacaacttggtagccatcttcacattggtatgacatatctatcttggtcttagt |
363 |
Q |
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| T |
48964773 |
tcatcctgataagtgataagcggacaaagttcaagtctttgtccccaacaacttggtagccatcttcacattggtatgaaatatctatcttggtcttagt |
48964674 |
T |
|
| Q |
364 |
tattggtaaaacacatctatatattgtatgcaaagaatggtgaacatgttactgaaagagaatactaagaagggaaagtagtatgttccataagtggagt |
463 |
Q |
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| T |
48964673 |
tattggtaaaacacatctatatattgtatgcaaagaatggtgaacatgttactgaaagagaatactaagaagggaaagtagtatgttccataagtggagt |
48964574 |
T |
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| Q |
464 |
atctttcttgtctttattttttcttccttgagatacatatatcatttcaaaataattaacagataaaactattcctaaaaagtttgtgagtcctaagaga |
563 |
Q |
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| T |
48964573 |
atctttcttgtctttattttttcttccttgagatacatatagcatttcaaaataattgacagatattactattcctaaaaagtttgtgaatcctaacaga |
48964474 |
T |
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| Q |
564 |
aaagctcagcagtgagttagaatgacatgatagaattattccattctataagaaagggaatctaactcatatatctaaggtaaaacaaaatcattcatcc |
663 |
Q |
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| T |
48964473 |
aaagttcagcagtgaattagaatgacatgatagaattattccattctataagaaagggaatctaactcatatatctaaggtaaaacaaaatcattcatcc |
48964374 |
T |
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| Q |
664 |
atttggggatcatatatatacaacacaaagctttgaattatttattcagtgttttgaaattgaagggaaaatattgaaggcaattgcagccatttagaaa |
763 |
Q |
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| T |
48964373 |
atttggggatcatatatatacaacacaaagctttgaattatttattcagtgttttgaaattgaagggaaaatattgaaggcaattgcagccatttagaaa |
48964274 |
T |
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| Q |
764 |
gtttgatttatgagatgtacaaaatatcttcaatttgctatttgctcaattgtgtgatggtaataacgagtatatctttttgaacggtgat |
854 |
Q |
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| T |
48964273 |
gtttgatttatgagatgtacaaaatatcttcaatttgctatttgctcaattgtgtgatggtaataacgagtatatctttttgaacggtgat |
48964183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 696 - 807
Target Start/End: Complemental strand, 48959961 - 48959850
Alignment:
| Q |
696 |
ttgaattatttattcagtgttttgaaattgaagggaaaatattgaaggcaattgcagccatttagaaagtttgatttatgagatgtacaaaatatcttca |
795 |
Q |
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| T |
48959961 |
ttgaatttttttttcagtgttttgaaattgaagaggaaaaaatgaaggcaattacaactagcaggaaagtttgatttttaagatgtacaatatgtcttca |
48959862 |
T |
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| Q |
796 |
atttgctatttg |
807 |
Q |
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| T |
48959861 |
atttgctatttg |
48959850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 48960380 - 48960315
Alignment:
| Q |
306 |
ccccaacaacttggtagccatcttcacattggtatgacatatctatcttggtcttagttattggta |
371 |
Q |
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| T |
48960380 |
ccccaacaacttcatagccatctccacattgatatcaaatgtctatcttggtcttagtttttggta |
48960315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 486 - 591
Target Start/End: Complemental strand, 48960148 - 48960039
Alignment:
| Q |
486 |
cttccttgagatacatatat----catttcaaaataattaacagataaaactattcctaaaaagtttgtgagtcctaagagaaaagctcagcagtgagtt |
581 |
Q |
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| T |
48960148 |
cttccatgagatacatatatacagcatttcaaaataattaagagatcttactaatcctaacaaacttatgagtccaaacagaaaagtacagctgtgagtt |
48960049 |
T |
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| Q |
582 |
agaatgacat |
591 |
Q |
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| T |
48960048 |
agaatgacat |
48960039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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