View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4581-Insertion-4 (Length: 640)
Name: NF4581-Insertion-4
Description: NF4581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4581-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 317 - 640
Target Start/End: Original strand, 43286691 - 43287019
Alignment:
| Q |
317 |
acatacttaaaaacttgtatgaaaacaatttgactttaggctcgggttaaaaatagaaaatagtta----ataagttatctcatagcggataaaccagct |
412 |
Q |
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| T |
43286691 |
acatacttaaaaacttgtatgaaaacaatttgactttaggctcgggttaaaaatagaaaatagttagttaataagttatctcatagcggataaaccagct |
43286790 |
T |
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| Q |
413 |
gatttagttt-gtagtctttggaaaactagctattgaactagtttataagtatgaaaagacaagaaaagatatatttaatatttagttttttctataaag |
511 |
Q |
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| T |
43286791 |
gatttagttttgtagtctttcgaaaactagctattgaactagtttataagtatgaaaagacaagaaaagatatatttaatatttaattttttctataaag |
43286890 |
T |
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| Q |
512 |
gcttaattaggttgtttattcaaataaagatgatttcaatccaaacatgcaatattttgcaggttcttcctctcgtgcctcctgatgaagggggatctcc |
611 |
Q |
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| T |
43286891 |
gcttaattaggttgtttattcaaataaagatgatttcaatccaaacatgcaatattttgcaggttcttcctctcgtgcctcctgatgaagggggatctcc |
43286990 |
T |
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| Q |
612 |
ttacgcaggccaggttttcaatttttgta |
640 |
Q |
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| T |
43286991 |
ttacgcaggccaggttttcaatttttgta |
43287019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 43286338 - 43286637
Alignment:
| Q |
8 |
tttccttccctcgtgctgcttcttcgtctttggttaccacttccttaactcaattcaccgtcggtgaagatttgccgcaaaactacggagaagattggct |
107 |
Q |
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| T |
43286338 |
tttccttccctcgtgctgcttcttcgtctttggttaccacttccttaactcaattcaccgtcggtgaagatttgccgcaaaactacggagaagattggct |
43286437 |
T |
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| Q |
108 |
tcccaaacccgaccttcatctccgcagaagagccggtattcttctccatcccacttcgtttcaaagcccctatggtatcggcgatctcggaaacgaagcc |
207 |
Q |
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| T |
43286438 |
tcccaaacccgaccttcatctccgcagaagagccggtattcttctccatcccacttcgtttcaaagcccctacggtatcggcgatctcggaaacgaagcc |
43286537 |
T |
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| Q |
208 |
tttcgtttcattgattggctccaccaaaccggttgctccctttggcaggttcccc--tttcccctatacatttacattacattcagagcctgtttaaatc |
305 |
Q |
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| T |
43286538 |
tttcgtttcattgattggctccaccaaaccggttgctccctttggcaggttccccctttccccctatacattttcattacattcagagcctgtttaaatc |
43286637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 473
Target Start/End: Complemental strand, 28363621 - 28363543
Alignment:
| Q |
396 |
tagcggataaaccagctgatttagtttgtagtctttggaaa-actagctattgaactagtttataagtatgaaaagaca |
473 |
Q |
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||||||| |||| | |||||| | |||||||| ||||| || | ||||| |||||||||||||||||||||||| |||| |
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| T |
28363621 |
tagcggagaaactatctgattgaatttgtagtgtttggtaatattagctgttgaactagtttataagtatgaaatgaca |
28363543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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