View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4581-Insertion-6 (Length: 612)
Name: NF4581-Insertion-6
Description: NF4581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4581-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 338 - 611
Target Start/End: Original strand, 27513030 - 27513303
Alignment:
| Q |
338 |
aggagggatagttgcttactactctggataagttggtttctggattgaagattcattttactagaaataacgtcattggtctgaatttggagaaagattc |
437 |
Q |
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| T |
27513030 |
aggagggatagttgcttactactctggataagttggtttctggattgaagattcattttactagaaataacgtcattggtctgaatttggagaaagattc |
27513129 |
T |
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| Q |
438 |
ataacgactattcccagttcttctttcttgttcaattagagatttacaattcggtaatgcttagtatagtgaagtccaaaatcacgacaatattcccaag |
537 |
Q |
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| T |
27513130 |
ataacgactattcccagttcttctttcttgttcaattagagatttacaattcggtaatgcttagtatagtgaaatccaaaatcacgacaatattcccaag |
27513229 |
T |
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| Q |
538 |
tgtacataagtgctactgaattgaaagtttgacttcaatacacccattactccgtgatttccggccacaacaca |
611 |
Q |
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| T |
27513230 |
tgtacataagtgctactgaattgaaagtttgacttcaatacacccattactccgtgatttccagccataacaca |
27513303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 27512733 - 27513033
Alignment:
| Q |
8 |
cagataactaatcttcgaaaa-ttagagataaatctatcccacttctactaa-----taaaccaaccccaagagacta--tcttaatcttcaaaaactat |
99 |
Q |
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| T |
27512733 |
cagataactaatcttcgaaaaattagagataaatctttcccatttctaccaataaattaaaccaaccccaagagactatctcttaatcttcaaaaactat |
27512832 |
T |
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| Q |
100 |
gttgttacaatgaagccatgatacgccaaaccactgctaaccatgcatattatatactttactctagtgcatgcacttcttcaccttcaatccctcacca |
199 |
Q |
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| T |
27512833 |
gttgttacaatgaagccatgatacaccaaaccacagctaaccatgcatattatatactttactctagtgcatgcacatcttcaccttcaatccctcacca |
27512932 |
T |
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| Q |
200 |
aactaaataaaatgttgaattggctgattgattaatgcatcttcacctttgtactcatccattgagttatcacatcccaaaggttaatgaatgtgctagg |
299 |
Q |
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| T |
27512933 |
aactaaataaaatgttgaattgcctgattgattaatgcatcttcacctttgtactcatccattgagttatcacatcccaaaggttaatgaatttgctagg |
27513032 |
T |
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| Q |
300 |
a |
300 |
Q |
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| T |
27513033 |
a |
27513033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 489 - 604
Target Start/End: Original strand, 36303569 - 36303684
Alignment:
| Q |
489 |
cggtaatgcttagtatagtgaagtccaaaatcacgacaatattcccaagtgtacataagtgctactgaattgaaagtttgacttcaatacacccattact |
588 |
Q |
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| T |
36303569 |
cggtaatgcttagtacagcgatatccaaaaccacgacactatatgaaagtgtacataagtgctattgaattgaaagtttgacttcaaaacacccatgatt |
36303668 |
T |
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| Q |
589 |
ccgtgatttccggcca |
604 |
Q |
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| T |
36303669 |
ctgtgatttccggcca |
36303684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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