View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4581-Insertion-7 (Length: 610)
Name: NF4581-Insertion-7
Description: NF4581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4581-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 183 - 601
Target Start/End: Complemental strand, 41011162 - 41010747
Alignment:
| Q |
183 |
tacaattccttttgtgtgatctctaggcattttaatactttgtgaattccatgaactctattgaattaatcaatatgttttggccttt----tgtatacc |
278 |
Q |
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| T |
41011162 |
tacaatttcttttgtgtgatctctaggcattttaatactttgtgaattccatgaactctattgaattaatcaatatgttttggcctttcttttgtatacc |
41011063 |
T |
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| Q |
279 |
ttttgtcgaaatgtttgtatttaaaattgaaacttttttcccacaggtaatctatgtaaaattagcgaattagctagcgtaacaatttgattcggcgaat |
378 |
Q |
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| T |
41011062 |
ttttgtcgaaatgtttgtatttaaaattgaaacttttttcccacaggtaatctatgtaaaattaacgaattagcta---------tttgattcggcaaat |
41010972 |
T |
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| Q |
379 |
gcttaatctcgcaaacatattcatcacgaagtatacgcgaatgacgtgtagcgaaatgtttggaattatgtattatctaaactttccatgatctttttaa |
478 |
Q |
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| T |
41010971 |
gcttaatctcgcaaacatattcatcacgaagtatacgcgaatgacgtgtagcgaaatgtttggaattatgtattatctaaactttccatgatctttttaa |
41010872 |
T |
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| Q |
479 |
ctaaatccacaaggcgataagataatacataattggaaatgtagcgaattgaataagctttgacatttgacaagtctaaaggactagcgttggaaatgta |
578 |
Q |
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| T |
41010871 |
ctaaatccacaaggcgataagataatacataattggaaatgtagtgaattgaataagctttgacatttgacaagtctaaaggactagcgttggaaatgta |
41010772 |
T |
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| Q |
579 |
t--agctactacaatattttatgat |
601 |
Q |
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| T |
41010771 |
tagagctactacaatattttatgat |
41010747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 41011613 - 41011442
Alignment:
| Q |
8 |
gaaggcactcaaaaaattgaaaaatgaaggcttatatatttacatctatgcaagttgaagagtttggttctcgattgtcttccttttagtgcacacctcc |
107 |
Q |
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| T |
41011613 |
gaaggcactcaaaaaattgaaaaatgaaggcttatatacttacatctatgcaagttcaagagtttggttctcgattgtcttccttttagtgcacacctcc |
41011514 |
T |
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| Q |
108 |
atcgactcaaagctcttcaccagattgcggtgatattcacttgtctacagttgtccaatgttggaggaattt |
179 |
Q |
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| T |
41011513 |
atcgactcaaagctcttcaccagattgcggtgatattcacttgtctacagttgtccaatgttggaggaattt |
41011442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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