View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4581-Insertion-9 (Length: 355)
Name: NF4581-Insertion-9
Description: NF4581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4581-Insertion-9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 106 - 355
Target Start/End: Complemental strand, 30016702 - 30016468
Alignment:
| Q |
106 |
tcctattagaataaaataatatgtattataatttatatggtgcatgtcatagggtacgttactgttgaggagatgaaggaggataattaactatttgcat |
205 |
Q |
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| T |
30016702 |
tcctattagaataaa-taatatgtattataatttatatggtgcatgtcatagggtacgttactgttgaggagatgaaggaggataattaactatttgcat |
30016604 |
T |
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| Q |
206 |
tttttaattatgtgtgtgttccaaactcatgcaacgtcctcacaaactaccacctctacnnnnnnnnnnnngctagggaaaacaaaaccacatttaagca |
305 |
Q |
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| T |
30016603 |
tttttaattatgtgtgtgttccaaactcatgcaacgtcctcacaaactaccacctcta--------------ctagggaaaacaaaaccacatttaagca |
30016518 |
T |
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| Q |
306 |
cgtgtggtgtgggatcaccacacctcatcattttccaccactatttttag |
355 |
Q |
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| T |
30016517 |
cgtgtggtgtgggatcaccacacctcatcattttccaccactatttttag |
30016468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 30016801 - 30016767
Alignment:
| Q |
7 |
aggaagatataaacaaaaagggattaatccaacct |
41 |
Q |
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| T |
30016801 |
aggaagatataaacaaaaagggattaatccaacct |
30016767 |
T |
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