View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4581_high_3 (Length: 416)
Name: NF4581_high_3
Description: NF4581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4581_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 51413369 - 51413767
Alignment:
| Q |
1 |
ttgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtatttcatttcaccgttggagtatcagttcagttgta |
100 |
Q |
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| T |
51413369 |
ttgaacagcgtgatggtgaagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtatttcatttcaccgttggagtatcagttcagctgta |
51413468 |
T |
|
| Q |
101 |
gtagcagtccacctcgtctctctcgcggtggcgccagcagtagtaggaggaagcttttgtctccggccaaggaggatggtcgccggcaaatgaaggtgtg |
200 |
Q |
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| T |
51413469 |
gtagcagtccacctcgtctctctcgcggtggcgccagcagtagtaggaggaagcttttgtctccggccaaggaggatggtcgccggcaaatgaaggtgtg |
51413568 |
T |
|
| Q |
201 |
tcgcggcaatgaaaggaggcgcgtgaagatgacaactttgtctagggagacagaaaaggagaaagagtttcatgttgaccaggcggcggaagagttcata |
300 |
Q |
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| T |
51413569 |
tcgcggcaatgaaaggaggcgcgtgaagatgacaactttgtctagggagacagaaaaggagaaagagtttcatgttgaccaggcggcggaagagttcata |
51413668 |
T |
|
| Q |
301 |
gaaaagttttacagagaattgaggttgcagaaatggttggatcatcatcaacatcaacatcaacatcactattaatgctgacgtgtcctgtgtatttga |
399 |
Q |
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| T |
51413669 |
gaaaagttttacagagaattgaggttgcagaaatggttggatcatcatcaacatcaacatcaacatcactattaatgctgacgtgtcctgtgtgtttga |
51413767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 2 - 166
Target Start/End: Original strand, 51418423 - 51418584
Alignment:
| Q |
2 |
tgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtatttcatttcaccgttggagtatcagttcagttgtag |
101 |
Q |
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| T |
51418423 |
tgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgatgctgatatgtattttatttcaccgttggagtatcagttcagctgtag |
51418522 |
T |
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| Q |
102 |
tagcagtccacctcgtctctctcgcggtggcgccagcagtagtaggaggaagcttttgtctccgg |
166 |
Q |
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| T |
51418523 |
cagcagtccaccgcgtctctctc---gtggtgcaaacagtagtaggaggaagctattatctccgg |
51418584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 348
Target Start/End: Original strand, 51418698 - 51418763
Alignment:
| Q |
283 |
gcggcggaagagttcatagaaaagttttacagagaattgaggttgcagaaatggttggatcatcat |
348 |
Q |
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| T |
51418698 |
gcggcagaggagttcatagagaggttttacagagagttgaggttgcagaaatggttggatcatcat |
51418763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 51416472 - 51416582
Alignment:
| Q |
58 |
gatatgtatttcatttcaccgttggagtatcagttcagttgtagtagcagtccacctcgtctctctcgcg-gtggcgccagcagtagtaggaggaagctt |
156 |
Q |
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| T |
51416472 |
gatatgtatttcgtttcaccgttggaatatcagttcagctgtagcagcaatccaccgcatctcactcgtgcatggtgcaagcagcagtaggagaaagcta |
51416571 |
T |
|
| Q |
157 |
ttgtctccggc |
167 |
Q |
| |
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|| |||||||| |
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| T |
51416572 |
ttatctccggc |
51416582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 29323690 - 29323760
Alignment:
| Q |
19 |
aagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtatttcatttcaccgttggagtatca |
89 |
Q |
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| T |
29323690 |
aagcaccacgaagcactcatgtgccgtccacgtgatgctgatatgtatttcgtttcaccgttggagtatca |
29323760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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