View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4581_low_1 (Length: 596)
Name: NF4581_low_1
Description: NF4581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4581_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 152 - 455
Target Start/End: Original strand, 22148557 - 22148860
Alignment:
| Q |
152 |
aatcacatggccatggcgatggaaaaaggtggggttgtgggtgacgatgacgacgaagatgatgatgaagatggtggccttgtcattgtagctggtgagc |
251 |
Q |
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| T |
22148557 |
aatcacatggccatggcgatggaaaaaggtggggttgtgggtgacgatgacgacgaagatgatgatgaagatggtggccttgtcattgtagctggtgagc |
22148656 |
T |
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| Q |
252 |
ttaatcagggtttggaagaccaagagtggggggagagtgccaatgttccggtggatggcgggagaaaggatgcggtggaaccggggaaggcagtcgcggg |
351 |
Q |
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| T |
22148657 |
ctaatcagggtttggaagaccaagagtggggggaaagtgccaatattccggtggatggtgagagaaaggatgccgtggaaccggggaagccagtcgcggg |
22148756 |
T |
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| Q |
352 |
tcccgctgctggtggcattcctgttgttcctaaagttggttatggtagtcatgctcatgggtatcatccatttcattcccagtttaaggttagtttcttc |
451 |
Q |
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| T |
22148757 |
tcctgctgctggtggcattcctgttgttcctaaagttggttatggtaatcatgctcatgggtatcatccatttcattcccagtttaaggttagtttcttc |
22148856 |
T |
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| Q |
452 |
aaag |
455 |
Q |
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| T |
22148857 |
aaag |
22148860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 489 - 581
Target Start/End: Original strand, 22148890 - 22148987
Alignment:
| Q |
489 |
atagtatgaatgaatgggttg-----agttgagttgtatatgcttggctttgtagtaattgttagacagtttaaattgaagaaatttgatcctgcttt |
581 |
Q |
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| T |
22148890 |
atagtatgaatgaatgggttgagttgagttgagttgtatatgcttggctttgtagtaattgttagacactttaaattgaagaaatttgatcctgcttt |
22148987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 22148422 - 22148495
Alignment:
| Q |
14 |
gaagagaacgaagaaggtggaggcacagagctgctgattccgggattatctggaggaggaggaggtggtggtgg |
87 |
Q |
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| T |
22148422 |
gaagagaacgaagaaggtggaggcacagagccgctgattccgggattatctggaggaggaggtggtggtggtgg |
22148495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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