View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4581_low_10 (Length: 214)

Name: NF4581_low_10
Description: NF4581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4581_low_10
NF4581_low_10
[»] chr2 (1 HSPs)
chr2 (19-198)||(38321365-38321544)
[»] chr4 (2 HSPs)
chr4 (139-187)||(2888809-2888857)
chr4 (139-187)||(4368796-4368844)
[»] chr8 (1 HSPs)
chr8 (132-187)||(11319365-11319421)
[»] chr3 (3 HSPs)
chr3 (133-190)||(564852-564909)
chr3 (139-187)||(30421619-30421667)
chr3 (136-190)||(532271-532325)
[»] chr5 (3 HSPs)
chr5 (133-194)||(38048863-38048925)
chr5 (137-187)||(38726788-38726838)
chr5 (132-187)||(6522147-6522203)
[»] chr7 (1 HSPs)
chr7 (135-187)||(34412168-34412221)
[»] chr1 (1 HSPs)
chr1 (139-187)||(1273523-1273569)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 38321365 - 38321544
Alignment:
Q  19 gttctttctagcattactgctagaacaacagtttggttcagaagaaaacagatacgaaaacgcaaacaaattttattgcagggttcggtcaattgtgcat 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  38321365 gttctttctaccattactgctagaacaacagtttggttcagaagaaaacagataccaaaacgcaaacaaattttatttcagggttcggtcaattgtgcat 38321464  T
Q  119 gtgtttccgactatagtacctttctattattcaagcttagagttacagtttacaacttgcgtttaaatattatggttcat 198  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38321465 gtgtttccgactatattacctttctattattcaagcttagagttccagtttacaacttgcgtttaaatattatggttcat 38321544  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 2888809 - 2888857
Alignment:
Q  139 tttctattattcaagcttagagttacagtttacaacttgcgtttaaata 187  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||    
T  2888809 tttctattattcaagcttagagttacagattacaacttgtgtttaaata 2888857  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 4368796 - 4368844
Alignment:
Q  139 tttctattattcaagcttagagttacagtttacaacttgcgtttaaata 187  Q
    |||||||||||||||||||||| ||||   ||||||||| |||||||||    
T  4368796 tttctattattcaagcttagaggtacaaagtacaacttgtgtttaaata 4368844  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 11319421 - 11319365
Alignment:
Q  132 tagtacctttctattattcaagcttagag-ttacagtttacaacttgcgtttaaata 187  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||| | |||||||    
T  11319421 tagtacctttctattattcaagcttagagtttacagattacaacttgtgcttaaata 11319365  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 564852 - 564909
Alignment:
Q  133 agtacctttctattattcaagcttagagttacagtttacaacttgcgtttaaatatta 190  Q
    |||||||||||||||||||   |||||||||||  |||||||||| ||||||||||||    
T  564852 agtacctttctattattcacttttagagttacaaattacaacttgtgtttaaatatta 564909  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 30421667 - 30421619
Alignment:
Q  139 tttctattattcaagcttagagttacagtttacaacttgcgtttaaata 187  Q
    ||||||||||||||||||| |||||||| ||||||| || |||||||||    
T  30421667 tttctattattcaagcttaaagttacagattacaacatgtgtttaaata 30421619  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 532271 - 532325
Alignment:
Q  136 acctttctattattcaagcttagagttacagtttacaacttgcgtttaaatatta 190  Q
    ||||||||||||||||   |||||||||||  |||||||||| ||||||||||||    
T  532271 acctttctattattcacttttagagttacaaattacaacttgtgtttaaatatta 532325  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 38048925 - 38048863
Alignment:
Q  133 agtacctttctattattcaagcttagag-ttacagtttacaacttgcgtttaaatattatggt 194  Q
    ||||| ||||||||||||||| | |||| |||||| |||||||||| ||||||||| ||||||    
T  38048925 agtacatttctattattcaagttaagagtttacagattacaacttgtgtttaaatactatggt 38048863  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 38726788 - 38726838
Alignment:
Q  137 cctttctattattcaagcttagagttacagtttacaacttgcgtttaaata 187  Q
    |||||||||||||||| ||||| |||| || |||||||||| |||||||||    
T  38726788 cctttctattattcaaacttagggttagagattacaacttgtgtttaaata 38726838  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 6522147 - 6522203
Alignment:
Q  132 tagtacctttctattattcaagctta-gagttacagtttacaacttgcgtttaaata 187  Q
    ||||||||||||||||||||| |||| || |||||  |||||||||| |||||||||    
T  6522147 tagtacctttctattattcaaacttaggatttacaaattacaacttgtgtttaaata 6522203  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 34412168 - 34412221
Alignment:
Q  135 tacctttctattattcaagcttagag-ttacagtttacaacttgcgtttaaata 187  Q
    |||||||||||||||||||||||| | |||||| |||||| ||| |||||||||    
T  34412168 tacctttctattattcaagcttagggtttacagattacaatttgtgtttaaata 34412221  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 1273569 - 1273523
Alignment:
Q  139 tttctattattcaagcttagagttacagtttacaacttgcgtttaaata 187  Q
    ||||||||| |||||||||||||||||  |||||||||| |||||||||    
T  1273569 tttctattagtcaagcttagagttaca--ttacaacttgtgtttaaata 1273523  T

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