View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4581_low_4 (Length: 404)
Name: NF4581_low_4
Description: NF4581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4581_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 22 - 369
Target Start/End: Complemental strand, 330394 - 330047
Alignment:
| Q |
22 |
ggcgtcgtcgcatatggtgtcagtaatttgttaagagttaagcccgtgagcccaaaccaaaaactagttcattaggtaggagagcctcgtggcttaagtg |
121 |
Q |
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| T |
330394 |
ggcgtcgtcgcatatgatgtcagtaatttgttaagagttaagcccgtgagcccaaatcaaaaactagctcattaggtaggagagcctcgtggcttaagtg |
330295 |
T |
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| Q |
122 |
ctcttaggttgcaatcaaggtcacactaacttcatgtgttttaaatacttaagatttgaaacaaatactaaacaagcaaacaaaatccaatacttatgat |
221 |
Q |
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| T |
330294 |
ctcttaggttgcaatcaaggccacactaacttcatgtgttttaaatacttaagatttgaaacaaatactaaacaagcaaacaaaatccaatacttatgat |
330195 |
T |
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| Q |
222 |
tctcatcaaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctcctatcaaattgaaattttgcacattccattgttggtaattctt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
330194 |
tctcatcaaaagaaatgtgtttatagatgcatacagttacaaatagaacaatttctcccatcaaattgaaattttgcacattccattactggtaattctt |
330095 |
T |
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| Q |
322 |
aatattttatgtaaaatagcaaaatacagagacttgcaatctattggt |
369 |
Q |
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| T |
330094 |
aatattttatgtaaaatagtaaaatacagagacttgcaatctattggt |
330047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 37223635 - 37223591
Alignment:
| Q |
76 |
aaccaaaaactagttcattaggtaggagagcctcgtggcttaagt |
120 |
Q |
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| T |
37223635 |
aaccaaaaactagtccattaggtgggagagcctaatggcttaagt |
37223591 |
T |
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