View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4581_low_9 (Length: 217)
Name: NF4581_low_9
Description: NF4581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4581_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 18362658 - 18362856
Alignment:
| Q |
1 |
atgaaaagtttttcaggttatacacacatgcagttgttgaaccatttatccttgctaccgaaagaaggctaagtgaaatgcatccaatccatcgaatatt |
100 |
Q |
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| T |
18362658 |
atgaaaagtttttcaggttatacacacatgcagttgttgaaccatttatccttgctaccaaaagaaggctaagtgaaatgcatccaatccatcgaatatt |
18362757 |
T |
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| Q |
101 |
gaatcctcatttcaaagacaccatgcatataaatgccttgactagacttatccttattaactctggagaaattcttgagagaatgttatttcctggtga |
199 |
Q |
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| T |
18362758 |
gaatcctcatttcaaagacaccatgcatataaatgccttgactagacttatccttattaactctggaggaattcttgagagaatgttatttcctggtga |
18362856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 3018825 - 3019023
Alignment:
| Q |
1 |
atgaaaagtttttcaggttatacacacatgcagttgttgaaccatttatccttgctaccgaaagaaggctaagtgaaatgcatccaatccatcgaatatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3018825 |
atgaaaagtttttcaggttatacacacatgcagttgttgaaccatttatccttgctaccaaaagaaggctaagtgaaatgcatccaatccatcgaatatt |
3018924 |
T |
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| Q |
101 |
gaatcctcatttcaaagacaccatgcatataaatgccttgactagacttatccttattaactctggagaaattcttgagagaatgttatttcctggtga |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3018925 |
gagtcctcatttcaaagacaccatgcatataaatgccttgactagacttatccttattaactctggaggaattcttgagagaatgttatttcctggtga |
3019023 |
T |
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