View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4582-Insertion-10 (Length: 277)
Name: NF4582-Insertion-10
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582-Insertion-10 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 54396941 - 54397210
Alignment:
| Q |
8 |
tttaaacggccatagtttcatgtcgttttgaactgattcatcggagaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtgggttcatg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54396941 |
tttaaacggccatagtttcatgtcgttttgaactgattcatcggagaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtggattcatg |
54397040 |
T |
|
| Q |
108 |
gcaacttgattcttagcagcatcgccgatgagtcgtttggtatcggtgaatgccacgtaggatggtgttgtgcggttgccttggtcgttagggatgattt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54397041 |
gcaacttgattcttagcagcatcgccgatgagtcgttcggtatcggtgaatgccacgtaggatggtgttgtgcggttgccttggtcgttagggatgattt |
54397140 |
T |
|
| Q |
208 |
cgacgcggtcgttttgctatacaccgacgcagctgtaggttgtgcctaggtctatgccaatggatttgcc |
277 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54397141 |
cgacgcggtcgttttgccatacaccgacgcagctgtaggttgtgcctaggtctatgccaatggctttgcc |
54397210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 238
Target Start/End: Original strand, 39986953 - 39987092
Alignment:
| Q |
99 |
gggttcatggcaacttgattcttagcagcatcgccgatgagtcgtttggtatcggtgaatgccacgtaggatggtgttgtgcggttgccttggtcgttag |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| || | || |||||||| || ||||| || || || || ||||| ||||||||||| | |
|
|
| T |
39986953 |
gggttcatggcaacttgattcttagcagcatcaccgatgagacgctcggagtcggtgaaagcgacgtaagacggcgtggtacggttaccttggtcgttgg |
39987052 |
T |
|
| Q |
199 |
ggatgatttcgacgcggtcgttttgctatacaccgacgca |
238 |
Q |
| |
|
||||||||| || ||||| | |||| ||||||||||||| |
|
|
| T |
39987053 |
cgatgatttcaacacggtcatgttgccatacaccgacgca |
39987092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 17261366 - 17261418
Alignment:
| Q |
84 |
aagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgat |
136 |
Q |
| |
|
||||||||||| | |||||| |||||| ||||||||||||| ||||| ||||| |
|
|
| T |
17261366 |
aagacggtgttttctgggtttatggcagcttgattcttagcggcatcaccgat |
17261418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 17269074 - 17269114
Alignment:
| Q |
84 |
aagacggtgttctgtgggttcatggcaacttgattcttagc |
124 |
Q |
| |
|
||||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
17269074 |
aagacggtgttttctgggttcatggcagcttgattcttagc |
17269114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 17647640 - 17647554
Alignment:
| Q |
53 |
gaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgatgag |
139 |
Q |
| |
|
||||||||||||||| || | |||||||||||||| |||||| |||||| |||| |||||||||||||| ||||| |||||||| |
|
|
| T |
17647640 |
gaatctacgaccaatcaacctcttagcatcgaagatggtgttgatagggttcctggcgacttgattcttagcggcatcaccgatgag |
17647554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 17703654 - 17703568
Alignment:
| Q |
53 |
gaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgatgag |
139 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||| |||||| || |||||||||||||| ||||| |||||||| |
|
|
| T |
17703654 |
gaatctacgaccaatcaacctcttagcatcgaagacggtgttgatagggttcgaggagacttgattcttagcggcatcaccgatgag |
17703568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 238
Target Start/End: Complemental strand, 17666294 - 17666109
Alignment:
| Q |
53 |
gaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgatgagtcgtttggtatcg |
152 |
Q |
| |
|
||||||||| ||||| || | |||||||||||||| |||||| |||||| ||| |||||||||||||| ||||| || ||||| || | | ||| |
|
|
| T |
17666294 |
gaatctacggccaatcaacctcttagcatcgaagatggtgttgatagggttcctggtgacttgattcttagcggcatcaccaatgagacgctctgagtcg |
17666195 |
T |
|
| Q |
153 |
gtgaatgccacgtaggatggtgttgtgcggttgccttggtcgttagggatgatttcgacgcggtcgttttgctatacaccgacgca |
238 |
Q |
| |
|
|| || || ||||| || ||||| || | ||| ||||||||||| | ||||||||| || ||||| | || | ||||||||||||| |
|
|
| T |
17666194 |
gtaaaggcgacgtaagacggtgtggttctgttaccttggtcgttggcgatgatttcaacacggtcatgtttccatacaccgacgca |
17666109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 17621556 - 17621470
Alignment:
| Q |
53 |
gaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgatgag |
139 |
Q |
| |
|
||||||||| ||||| || | ||||||||| ||||||||||| |||||| |||||||||||||||||||| ||| || ||||| |
|
|
| T |
17621556 |
gaatctacggccaatcaacctcttagcatcaaagacggtgttgatagggttcgaggcaacttgattcttagcagtatcaccaatgag |
17621470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 17717559 - 17717473
Alignment:
| Q |
53 |
gaatctacgaccaattaaacgcttagcatcgaagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgatgag |
139 |
Q |
| |
|
||||||||| ||||| || | ||||||||||||||||||||| |||||| ||| ||||||||| |||| ||||| |||||||| |
|
|
| T |
17717559 |
gaatctacggccaatcaacctcttagcatcgaagacggtgttgatagggttcgaggcgacttgattcatagcggcatcaccgatgag |
17717473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 16656728 - 16656676
Alignment:
| Q |
84 |
aagacggtgttctgtgggttcatggcaacttgattcttagcagcatcgccgat |
136 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
16656728 |
aagatggtgttttgtgggttagcggcaacttgattcttagcagcatcaccgat |
16656676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University