View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4582-Insertion-11 (Length: 199)
Name: NF4582-Insertion-11
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582-Insertion-11 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 13653576 - 13653733
Alignment:
| Q |
8 |
tcccctacaattctcctactagaaacttctcatatttttatgtttatcaacatcacaaaaagaagtatgtatttgaaatacttacttcaaaaacatcgag |
107 |
Q |
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| T |
13653576 |
tcccctacaattctcctactaaaaacttctcatatttttatgtctatcaacatcacaaaaagaagtatgtatttgaaatacatacttcaaaaacatcgag |
13653675 |
T |
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| Q |
108 |
ggacaaagactgtatcctcataaaataatttgatcact-gtcttgtctcttttgtatt |
164 |
Q |
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| T |
13653676 |
ggacaaagactgtatcctcataaaataatttgatcactcttcttgtctcttttgtatt |
13653733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 13659057 - 13659127
Alignment:
| Q |
16 |
aattctcctactagaaacttctcatattttta----tgtttatcaacatcacaaaaagaagtatgtatttg |
82 |
Q |
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| T |
13659057 |
aattctcctactaaaaacttctcatatttttataagtgtgtatgaagatcataaaaataagtatgtatttg |
13659127 |
T |
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