View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4582-Insertion-3 (Length: 546)
Name: NF4582-Insertion-3
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 32 - 517
Target Start/End: Original strand, 9551776 - 9552270
Alignment:
| Q |
32 |
gtgtgtgaaatgaaaaaagagtgtatgaatatgcaaaggaaagttctcggaaaagagtaagaaagcgacagatgattgtaactgaaatcgcatacagtca |
131 |
Q |
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| T |
9551776 |
gtgtgtgaaatgaaaaaagagtgtatgaatatgcaaaggaaagttctcggaaaagagtaagaaagcgacagatgatagtaactgaaatcgcatacagtca |
9551875 |
T |
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| Q |
132 |
cgggtattggtaaagatgaaaattgagagagcaaaaagtaattttaat-aatttttggaagtttggtttggtgggaaggaaacggatagagatattatga |
230 |
Q |
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| T |
9551876 |
cgggtatcgataaagatgaaaattgagagaacaaaaagtaattttaataaatttttggaagtttggtttggtgggaaggaaacggatagaga---tatga |
9551972 |
T |
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| Q |
231 |
gtggagaatgaatgtgtatgtgtttgcaatgcaaattgtgaaaaaagttgagagggaaaagttattcatgtgagtggatgtgggtcctactttttaaggt |
330 |
Q |
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| T |
9551973 |
gtggagaatgaatgtgta--tgtttgcaatgcaatttgtgaaaaaagttgagagggaaaagttattcatgtgagtggatgtgggtcctactttttaaggt |
9552070 |
T |
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| Q |
331 |
ttgaaaatttgtgagaagttt--tctctgtttgcagttggttttggtcagtcaagtacgttttgttgacaaaggggtgtcattatgaagttaatgactct |
428 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9552071 |
ttgaaaatttgtgagaagttttgtctgtgtttgcagttggttttggtcagtcaagtacgttttgttgacaaaggggtgtcattatgaagttaatgactct |
9552170 |
T |
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| Q |
429 |
aagtcaataagtatccaatgaccaactagtagatt-----------taatgttattcgtaggtcaaatctttatcttggtttttgaatgtataatgaata |
517 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
9552171 |
aattcaataagtatccaatgaccaactagtagatttagaccatgagtaatgttattcgtaggtcaaatctttatcttggtttctgaatgtataataaata |
9552270 |
T |
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