View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4582-Insertion-5 (Length: 495)
Name: NF4582-Insertion-5
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 5 - 495
Target Start/End: Complemental strand, 627543 - 627047
Alignment:
| Q |
5 |
acaatatgttgtgaagttatatccaaattaagcagtaacatttctctcatcaggtttgtattgtaccttaattagtacatgcatacata------tattt |
98 |
Q |
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| T |
627543 |
acaatatgttgtgaagttatatccaaattaagcagtaacatttctctcatcaggtttgtattgtaccttaattagtacatgcatacatacatatatattt |
627444 |
T |
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| Q |
99 |
atgtcatagttttagttaattagttattataaggtttttgatattgcaataatccttcagttgctgatgggaagaaaaggaggaagttggttctcttctg |
198 |
Q |
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| T |
627443 |
atgtcatagttttagttaatttgttattataaggtttttgatattgtaataatccttcagttgctgatgggaagaaaaggaggaagttggttctcttctg |
627344 |
T |
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| Q |
199 |
tcaagaaagttttcaagtcatcttcatcttctaaggacacgtcagtgccggtctccacgccggtgcagccggagaaaaaggtcatcaattttcatattca |
298 |
Q |
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| T |
627343 |
tcaagaaagttttcaagtcttcttcatcttctaaggacacgtcagtgccggtctccacgccggtgcagccggagaaaaaggtcatcaattctcatcttca |
627244 |
T |
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| Q |
299 |
tttaattataggatcatatgagataataatccttcttcatttcttttcaaattgacgaggaatttttcgagcaccagaaacaataacggactaatgacaa |
398 |
Q |
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| T |
627243 |
tttaattataggatcatatgagatgttaatccttcttcatttcttttcaaattgtcgaggaatttttcgagcaccagaaacaataacggactaatgacaa |
627144 |
T |
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| Q |
399 |
ggactgttaagagatcagaactacacgagatagttagtggtgtcctgatgttttgatagttcaagtcattagttcgttatagtttttggtgcattgc |
495 |
Q |
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| T |
627143 |
ggactattaagagatcagaactacacgagatagtaagtggtgtcctgatgttttgatagttcaagtcattagttcgttatagtttttggtgcattgc |
627047 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 41669864 - 41669913
Alignment:
| Q |
174 |
aaaggaggaagttggttctcttctgtcaagaaagttttcaagtcatcttc |
223 |
Q |
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| T |
41669864 |
aaaggaagcagttggttctcatctgtgaagaaagttttcaagtcttcttc |
41669913 |
T |
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