View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4582-Insertion-6 (Length: 437)
Name: NF4582-Insertion-6
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 29021538 - 29021345
Alignment:
| Q |
7 |
agaataagcattgcctgcattgcttctgcttaccgcaagagaccaacagtgacggtatcatattccattacctccgatccagacgactatgcaattgcaa |
106 |
Q |
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| T |
29021538 |
agaataaccattgcctgcattgcttctgcttaccgcaagagaccaatagtgacggtatcatattccattacctccgaaccagacgactatgcaattgcaa |
29021439 |
T |
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| Q |
107 |
tgtaagttacttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgttatatgtatgcctgcttgttttttcctt |
200 |
Q |
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| T |
29021438 |
tgtaagttacttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgttatatgtatgcctgcttgttttttcctt |
29021345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 28673601 - 28673751
Alignment:
| Q |
20 |
cctgcattgcttctgcttaccgcaagagaccaacagtgacggtatcatattccattacctccgatccagacgactatgcaattgcaatgtaagttacttc |
119 |
Q |
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| T |
28673601 |
cctgcattgcttctgcttgccgcaagagaccaacattgacggtatcaatttccattacttccgaaccagaggactatgca------atgtaagttactta |
28673694 |
T |
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| Q |
120 |
acatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgttata |
176 |
Q |
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| T |
28673695 |
acatttcattgatccgttggtgagtttaaagggtttaacttgtcttgatttgttata |
28673751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 269 - 365
Target Start/End: Complemental strand, 29021346 - 29021250
Alignment:
| Q |
269 |
ttaacgtactgtttaattaattttgcctctcgtcgagaacaagatgaatcaaatgattaaatctatttgcaaccttaatagtactgaacgcacatta |
365 |
Q |
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| T |
29021346 |
ttaacttactgtttaattaattttgcctttggtcaagaacaagatgaaccaaatgattaaatctatttgcaaccttaatagtattgaacgcacatta |
29021250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 211 - 365
Target Start/End: Original strand, 28695980 - 28696130
Alignment:
| Q |
211 |
tttgtagttattttatttcttgaagctatggactaactgttgtttcttttcttcttctttaacgtactgtttaattaattttgcctctcgtcgagaacaa |
310 |
Q |
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| T |
28695980 |
tttgtggttgttttatttcttgaagctatggactaactgttgtttcctttcttcat---taaattagtgtttaattaatttt-cctttggtcaa-aacaa |
28696074 |
T |
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| Q |
311 |
gatgaatcaaatgattaaatctatttgcaaccttaat-agtactgaacgcacatta |
365 |
Q |
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| T |
28696075 |
gatgaatgaaatcattaaatctatttgcaaccttaatcagtattgaatgcacatta |
28696130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 211 - 365
Target Start/End: Original strand, 28673765 - 28673915
Alignment:
| Q |
211 |
tttgtagttattttatttcttgaagctatggactaactgttgtttcttttcttcttctttaacgtactgtttaattaattttgcctctcgtcgagaacaa |
310 |
Q |
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||||| ||| ||||||||||||||||||||||||||| |||||||| ||||||| | ||| || ||||||||||||||| ||| | ||| | ||||| |
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| T |
28673765 |
tttgtggttgttttatttcttgaagctatggactaacagttgtttcctttcttcat---taaattagtgtttaattaatttt-cctttggtcaa-aacaa |
28673859 |
T |
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| Q |
311 |
gatgaatcaaatgattaaatctatttgcaaccttaat-agtactgaacgcacatta |
365 |
Q |
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| T |
28673860 |
gatgaatgaaatcattaaatctatttgcaaccttaatcagtattgaatgcacatta |
28673915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 28695851 - 28695933
Alignment:
| Q |
20 |
cctgcattgcttctgcttaccgcaagagaccaacagtgacggtatcatattccattacctccgatccagacgactatgcaattg |
103 |
Q |
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| T |
28695851 |
cctgcattgcttctgcttgccgcaagagaccaacattgacggtgtcaatttccattacttccga-acagacaactatgcaattg |
28695933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 28532449 - 28532392
Alignment:
| Q |
115 |
acttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt |
172 |
Q |
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| T |
28532449 |
acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgt |
28532392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 3438016 - 3438071
Alignment:
| Q |
117 |
ttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt |
172 |
Q |
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|||||| ||||||||||||||||||||| | ||||| ||||||||||||||||||| |
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| T |
3438016 |
ttcacacttcattgacttgttggtgagtctgaagggattaacttgtcttgatttgt |
3438071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 10615326 - 10615269
Alignment:
| Q |
114 |
tacttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttg |
171 |
Q |
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| T |
10615326 |
tacttcacattttattgactcattggtgagtttgaagggcttgacttgtcttgatttg |
10615269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 6588694 - 6588750
Alignment:
| Q |
116 |
cttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt |
172 |
Q |
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| T |
6588694 |
cttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgt |
6588750 |
T |
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