View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4582-Insertion-7 (Length: 379)
Name: NF4582-Insertion-7
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582-Insertion-7 |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 239 - 379
Target Start/End: Complemental strand, 26306216 - 26306076
Alignment:
| Q |
239 |
attacagcaaagataacaacaaaacaagttcatcaaaaacaagcatggaaacaaaaggtggagaagttagaaggcttcacataatctacttccttagtca |
338 |
Q |
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| T |
26306216 |
attacagcaaagataacaacaaaacaagttcatcaaaaacaagcatggaaacaaaaggtggagaagttagaaggcttcacataatctacttccttagtca |
26306117 |
T |
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| Q |
339 |
catgggtggtcatgcagaacatcctcatctcattcgtgttc |
379 |
Q |
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| T |
26306116 |
catgggtggtcatgcagaacatcctcatctcattcgtgttc |
26306076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 26306449 - 26306367
Alignment:
| Q |
8 |
atgttttggtaacagttcttttaccagcatgccggcagagagacaaagatctcttttgggtttttccatgttagttgtttttc |
90 |
Q |
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| T |
26306449 |
atgttttggtaacagttcttttaccagcatgccggcagagagacaaagatctcttttgggtttttccatgttagttgtttttc |
26306367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 781550 - 781475
Alignment:
| Q |
304 |
gttagaaggcttcacataatctacttccttagtcacatgggtggtcatgcagaacatcctcatctcattcgtgttc |
379 |
Q |
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| T |
781550 |
gttagaatgcttcatataatgtacttccttagtcacatgcgtggtcattcagaacagcctcatctctttcgtgttc |
781475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 379
Target Start/End: Complemental strand, 46209455 - 46209353
Alignment:
| Q |
274 |
aaaacaagcatggaaacaaaaggtggagaagttagaaggcttcacataatctacttccttagtcacatgggtggtcatgcagaacatcctcatctcattc |
373 |
Q |
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| T |
46209455 |
aaaacaagcatggaagcaaagtgtg---aagttagaaggcttcacataatctgcttatttagctacatgggtggttttgcagaacattatcgtctcatta |
46209359 |
T |
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| Q |
374 |
gtgttc |
379 |
Q |
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|||||| |
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| T |
46209358 |
gtgttc |
46209353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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