View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4582-Insertion-9 (Length: 296)

Name: NF4582-Insertion-9
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4582-Insertion-9
NF4582-Insertion-9
[»] chr4 (1 HSPs)
chr4 (5-296)||(28160561-28160852)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 28160561 - 28160852
Alignment:
Q  5 acaatccaaaccctgaaatgataccgtttgatttttatattatgttatggtatttgaaatgtttatactagtagtaaagaannnnnnngaggcaaagttc 104  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||       ||||| ||||||    
T  28160561 acaatccaaaccctgaaatgacaccgtttgatttttatattatgttatggtatttgaaatgtttataccagtagcaaagaatttttttgaggcgaagttc 28160660  T
Q  105 caatagtaaaatacttaagcccgataaatttgattcctttgttatattgttctcttannnnnnnncccaagtaaaggcaaagaaaagaaatatatgttgg 204  Q
    |||||||||||| ||||||| |||||||||||||| |||||| ||||||||||||||        || ||||||||| ||||||||||||||||||||||    
T  28160661 caatagtaaaattcttaagcacgataaatttgatttctttgtgatattgttctcttattttttttcctaagtaaaggtaaagaaaagaaatatatgttgg 28160760  T
Q  205 acacagaaaagtgtgtttccttcctcaactgtttatattaaaagatatagatatttataaaggaaaagtgttattctttttgctggataatg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28160761 acacagaaaagtgtgtttccttcctcaactgtttatattaaaagatatagatatttataaaggaaaagtgttattctttttgctggataatg 28160852  T

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