View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4582_high_11 (Length: 271)
Name: NF4582_high_11
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 26306091 - 26305987
Alignment:
| Q |
1 |
catctcattcgtgttcttcatcttgctcgaaacggtgtttatctcagaggtaaaaactcgtttatgttccatattttcattcaatttgttctgtactggc |
100 |
Q |
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| T |
26306091 |
catctcattcgtgttcttcatcttgctcgaaacggtgtttatctcagaggt-aaaactcgtttatgttccatattttcattcaatttgttctgtactggc |
26305993 |
T |
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| Q |
101 |
tctgat |
106 |
Q |
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|||||| |
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| T |
26305992 |
tctgat |
26305987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 26305958 - 26305894
Alignment:
| Q |
102 |
ctgatcgtaatgtttgttcttaaatgtgtattctgtcacacatagttcaaaactgcggtacacaa |
166 |
Q |
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| T |
26305958 |
ctgatcgtaatgtttgttcttaaatgtgtattctgtcacacatagttcaaaactgcggtacacaa |
26305894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 26305898 - 26305836
Alignment:
| Q |
192 |
cacaatcatatttgtagctgcatttgtcagcattttagaactatactgtcacaattgattctt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
26305898 |
cacaatcatatttgtagctgcatttgtcagcattttagaactatgctgtcacaattgcttctt |
26305836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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