View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4582_high_15 (Length: 239)
Name: NF4582_high_15
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 51351433 - 51351235
Alignment:
| Q |
8 |
accaaacatttaattaaagcatagtttgaagctaaaatcaattttatttaacactaactgggcaaagtctccgaagttcggaatagtccaataatttaga |
107 |
Q |
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| T |
51351433 |
accaaacatttaattaaagcatagtttgaagctaaaatcaattttatctaacactacctgggcaaagtctccgaa----------------taatttaga |
51351350 |
T |
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| Q |
108 |
ttcggacaaagaatgagctacgtccaagttcaatcaattttctgttaatgtttcaccttcctcctaacaaactaattactaacatttgcctattcaaaaa |
207 |
Q |
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| T |
51351349 |
ttcggacaaagaatgagctacgtctaagttcaatcaattttctgttaacgtttcaccttcctcctaacaaactaattactaacatttgcctattcaaaaa |
51351250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 12038084 - 12038052
Alignment:
| Q |
168 |
ctcctaacaaactaattactaacatttgcctat |
200 |
Q |
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| T |
12038084 |
ctcctaacaaactaactactaacatttgcctat |
12038052 |
T |
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