View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4582_high_2 (Length: 454)
Name: NF4582_high_2
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 35228356 - 35228045
Alignment:
| Q |
1 |
ccgccaataatgaaaaggcgctcttaaaagcggtggcaaatcaacctatagcggtttatattgccgcgacaaaacgcgcttttcaattttactcaagtgg |
100 |
Q |
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| T |
35228356 |
ccgccaataatgaaaaggcgctcttaaaagcggtggcaaatcaacctatagcggtttatatcgccgcgacaaaacgcgcttttcaattttactcaagtgg |
35228257 |
T |
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| Q |
101 |
aattttgaaaggaaaatgtggaatttatttagatcatacagtgactatagttggttatggcaccagtgatgatggtgtgaagtattggctagtgaaaaat |
200 |
Q |
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| T |
35228256 |
aattttgaaaggaaaatgtggaattgatttagatcatacagttactatagttggttatggtaccagtgatgatggtgtgaagtattggctagtgaaaaat |
35228157 |
T |
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| Q |
201 |
tcatggggtactaaatggggtgagaaaggatatatcaagattaagagagacgtgcatgccaaggaaggttcatgtggaattgctatggttcccacttatc |
300 |
Q |
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| T |
35228156 |
tcatggggtactaaatggggtgagaaaggatatatcaagattaagagagacgtgcatgccaaggaaggttcatgtggaattgctatggttcccacttatc |
35228057 |
T |
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| Q |
301 |
caattgtttaag |
312 |
Q |
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| T |
35228056 |
caattgtttaag |
35228045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 352 - 435
Target Start/End: Complemental strand, 35228046 - 35227963
Alignment:
| Q |
352 |
agtcttcttatactagtttgatgaattgcttgtgtttgaattagttatgtgtgtgagtgtttgaataaatagctagggtgtgta |
435 |
Q |
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| T |
35228046 |
agtcttcttatactagtttgatgaattgcttgtgtttgaattagttatgtgtgtgagtgtttgaataaatagctagggtgtgta |
35227963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 31176515 - 31176467
Alignment:
| Q |
181 |
agtattggctagtgaaaaattcatggggtactaaatggggtgagaaagg |
229 |
Q |
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| T |
31176515 |
agtattggttagtaaaaaattcatggggtactgggtggggtgagaaagg |
31176467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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