View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4582_high_7 (Length: 390)
Name: NF4582_high_7
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 102 - 320
Target Start/End: Complemental strand, 44789549 - 44789326
Alignment:
| Q |
102 |
tcaaagctagtagttaaatttactaaagagtttgtcttagatctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctc-a |
200 |
Q |
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| T |
44789549 |
tcaaagctaatagataaatttactcaagagtttgtcttagatctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaa |
44789450 |
T |
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| Q |
201 |
atgagcataccctcacgtttactcgttcgtatcctacct--tctcttcatcttcctctttccctg--atatattannnnnnnnagtacctaaattaattg |
296 |
Q |
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| T |
44789449 |
atgagcataccctcacgtttactcgttcgtatcctacctactctcttcatcttcctctttccctgatatatattattttttttagtacctaaattaattg |
44789350 |
T |
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| Q |
297 |
attaatttgcagaattcaggtaag |
320 |
Q |
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|||||||||||||||||||||||| |
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| T |
44789349 |
attaatttgcagaattcaggtaag |
44789326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 44793056 - 44792961
Alignment:
| Q |
142 |
atctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaatgagcataccctcacgtttactcgttcgtatcctac |
237 |
Q |
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| T |
44793056 |
atctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgtcgtcttctcaatgaacatacctccacgtttactcgttcgtatcctac |
44792961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 44797944 - 44797855
Alignment:
| Q |
142 |
atctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaatgagcataccctcacgtttactcgttcgta |
231 |
Q |
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| T |
44797944 |
atctaatcttgcgcgccctgcgattggatctcattgaacctggtcgtgtcgtcttctcaatgaacatacccccacgtttactcgttcgta |
44797855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 44801334 - 44801250
Alignment:
| Q |
147 |
atcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaatgagcataccctcacgtttactcgttcgta |
231 |
Q |
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| T |
44801334 |
atcttgcgtggcctacgattggatctcattgagcctggccatgtcgttttctcaatgaacatacctccacgtttactcgttcgta |
44801250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 44789290 - 44789240
Alignment:
| Q |
322 |
tggatgtgataggcgcagctgcaattcccgccgctggatttccgtgggagt |
372 |
Q |
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| T |
44789290 |
tggatgtgataggcgcagctgcaattcccgccgctggatttccgtgggagt |
44789240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 44805831 - 44805742
Alignment:
| Q |
142 |
atctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaatgagcataccctcacgtttactcgttcgta |
231 |
Q |
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| T |
44805831 |
atctaatcttgcgtggcctacgcttcgatgtcattgagcctggccgtgtcattttcacaatgaacatacccccacgtttactcgttcgta |
44805742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 44792219 - 44792182
Alignment:
| Q |
331 |
taggcgcagctgcaattcccgccgctggatttccgtgg |
368 |
Q |
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| T |
44792219 |
taggcgcagccgcaattcccgcagctggatttccgtgg |
44792182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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