View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4582_low_10 (Length: 353)
Name: NF4582_low_10
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 7e-77; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 36993792 - 36993639
Alignment:
| Q |
20 |
ccatgccttcaaagaactgatgaaaagtcaacgcagctactaatggtcttatagttttaggactctctgaagcacctaaagaaattcctatgataacaga |
119 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36993792 |
ccatgccttcaaagaactgatgaaaagtcaacgcagccactaatggtcttatggttttaggactctctgaagcacctaaagaaattcctatgataacaga |
36993693 |
T |
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| Q |
120 |
gtgaacaataattcccaactccaacacctatgataaaatcaaaaaatcatattc |
173 |
Q |
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| T |
36993692 |
gtgaacaataattcccaactccaacacctatgataaaatcaaaaaatcatattc |
36993639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 37019232 - 37019079
Alignment:
| Q |
20 |
ccatgccttcaaagaactgatgaaaagtcaacgcagctactaatggtcttatagttttaggactctctgaagcacctaaagaaattcctatgataacaga |
119 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37019232 |
ccatgccttcaaagaactgatgaaaagtcaacgcagccactaatggtcttatggttttaggactctctgaagcacctaaagaaattcctatgataacaga |
37019133 |
T |
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| Q |
120 |
gtgaacaataattcccaactccaacacctatgataaaatcaaaaaatcatattc |
173 |
Q |
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| T |
37019132 |
gtgaacaataattcccaactccaacacctatgataaaatcaaaaaatcatattc |
37019079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 36939627 - 36939484
Alignment:
| Q |
20 |
ccatgccttcaaagaactgatgaaaagtcaacgcagctactaatggtcttatagttttaggactctctgaagcacctaaagaaattcctatgataacaga |
119 |
Q |
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||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||||||||||||||| | |||||||||||| ||||| || |
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| T |
36939627 |
ccatgccttcaaagaactgatgaaaagtcaatgcagcgaccaatggccttatagtcttaggactctctgaagcacccagagaaattcctattataacgga |
36939528 |
T |
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| Q |
120 |
gtgaacaataattcccaactccaacacctatgataaaatcaaaa |
163 |
Q |
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| T |
36939527 |
gtgaacaataattcccaactccaatacctattatgaaatcaaaa |
36939484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 36956204 - 36956040
Alignment:
| Q |
20 |
ccatgccttcaaagaactgatgaaaagtcaacgcagctactaatggtcttatagttttaggactctctgaagcacctaaagaaattcctatgataacaga |
119 |
Q |
| |
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||||||| ||||| || |||||||| |||||||||||||| | || ||||| ||||||||||||||||||||||| | |||||||||||| |||||||| |
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| T |
36956204 |
ccatgccctcaaaaaattgatgaaaggtcaacgcagctacaagcggccttatggttttaggactctctgaagcacccagagaaattcctattataacaga |
36956105 |
T |
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| Q |
120 |
gtgaacaataattcccaactccaacacctatgataaaatcaaaaaatcatattctatcacaatcaat |
186 |
Q |
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|||||||||||| |||||||||||||||||| || ||||||||| | |||||| |||||||||||| |
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| T |
36956104 |
gtgaacaataatccccaactccaacacctataatgaaatcaaaaca--atattcaatcacaatcaat |
36956040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 36993649 - 36993612
Alignment:
| Q |
299 |
aaatcatattcatatctcatgcacaaatatctttatat |
336 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
36993649 |
aaatcatattcacatctcatgcacaaatatctttatat |
36993612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 37019089 - 37019052
Alignment:
| Q |
299 |
aaatcatattcatatctcatgcacaaatatctttatat |
336 |
Q |
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| T |
37019089 |
aaatcatattcacatctcatgcacaaatatctttatat |
37019052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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