View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4582_low_11 (Length: 334)
Name: NF4582_low_11
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 51216283 - 51216594
Alignment:
| Q |
18 |
gatacaatagcaggagagcgagggattcaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaacaggccaagaatattattac |
117 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51216283 |
gatacaatagtaggagagcgagggattcaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaacaggccaagaatattactac |
51216382 |
T |
|
| Q |
118 |
tagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51216383 |
tagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctca |
51216482 |
T |
|
| Q |
218 |
tagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatattgatcaacaagggtggc |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51216483 |
tagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatattgatcaacaagggtggc |
51216582 |
T |
|
| Q |
318 |
acctatgcttct |
329 |
Q |
| |
|
|||||||||||| |
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|
| T |
51216583 |
acctatgcttct |
51216594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 295
Target Start/End: Original strand, 51149066 - 51149337
Alignment:
| Q |
24 |
atagcaggagagcgagggattcaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaacaggccaagaatattattactagatg |
123 |
Q |
| |
|
|||| ||| ||| |||| |||||| | ||||| ||||||||||| |||||||||||||| ||||| ||||| || | |||| |||| |||||||||||| |
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|
| T |
51149066 |
atagtaggtgagagaggaattcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattactagatg |
51149165 |
T |
|
| Q |
124 |
aggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagatt |
223 |
Q |
| |
|
| || || ||||| |||||||| ||||||||||||||||| |||||||||||||| | || | |||||| |||| || || | ||||| ||||| || |
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|
| T |
51149166 |
aagcaactagtgcacttgatgctgagtctgaaaaagtggtacaagatgcacttgaccgtgtaatggtggagcgaacgacaataatagtggcgcataggtt |
51149265 |
T |
|
| Q |
224 |
atcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
295 |
Q |
| |
|
||| || || || |||||| ||| ||| ||||| ||||| ||||| ||||| | |||||||||||||||||| |
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|
| T |
51149266 |
atcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatga |
51149337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 295
Target Start/End: Complemental strand, 29934100 - 29933829
Alignment:
| Q |
24 |
atagcaggagagcgagggattcaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaacaggccaagaatattattactagatg |
123 |
Q |
| |
|
|||| ||| ||| |||| |||||| | || || ||||||||||| || ||||||||||||||||| | || || | || | |||| |||||||||||| |
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|
| T |
29934100 |
atagtaggcgagagaggaattcaattatccgggggacagaagcagcgggtggcaattgcaagagcgttggtgaagaatccgaaaatactattactagatg |
29934001 |
T |
|
| Q |
124 |
aggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagatt |
223 |
Q |
| |
|
| || || ||||| |||||||| ||||||||||||||||| |||||||||||||| | || | ||||||| |||| || || | || |||||||| || |
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|
| T |
29934000 |
aagcaactagtgcacttgatgctgagtctgaaaaagtggtgcaagatgcacttgactgtgttatggtggaccgaacaacaataatagtagctcataggtt |
29933901 |
T |
|
| Q |
224 |
atcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
295 |
Q |
| |
|
||| || |||||||||||| ||| ||||||||| ||||| ||||| ||||| |||||||||||||||||| |
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|
| T |
29933900 |
atcgactataaagggtgcagatttaattgcagtcgttaagaatggtgtgatatcagagaaaggaaaacatga |
29933829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 295
Target Start/End: Original strand, 51159929 - 51160200
Alignment:
| Q |
24 |
atagcaggagagcgagggattcaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaacaggccaagaatattattactagatg |
123 |
Q |
| |
|
|||| ||| ||| |||| |||||| | || || ||||||||||| ||||||||||||||| |||| ||||| || | |||| |||| |||||||||||| |
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|
| T |
51159929 |
atagtaggtgagagaggaattcaattatccgggggacagaagcagcgtgtggcaattgcacgagctatagtgaagaatccaaaaatactattactagatg |
51160028 |
T |
|
| Q |
124 |
aggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagatt |
223 |
Q |
| |
|
| || || ||||| |||||||| ||||||||||||||||| |||||||||||||| | || | |||||| |||| || || | ||||| ||||| || |
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|
| T |
51160029 |
aagcaactagtgcacttgatgctgagtctgaaaaagtggtacaagatgcacttgaccgtgtaatggtggagcgaacgacaataatagtggcgcataggtt |
51160128 |
T |
|
| Q |
224 |
atcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
295 |
Q |
| |
|
||| || || || |||||| ||| ||| ||||| ||||| ||||| ||||| | |||||||||||||||||| |
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|
| T |
51160129 |
atcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatga |
51160200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 51202622 - 51202899
Alignment:
| Q |
18 |
gatacaatagcaggagagcgagggattcaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaacaggccaagaatattattac |
117 |
Q |
| |
|
|||||| ||| ||||||| |||| ||||| | ||||| ||||||||||| |||||||||||||| ||||| ||||| || | |||| |||| |||||| |
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|
| T |
51202622 |
gatacagtagtaggagagagaggagttcaattatctgggggacagaagcagcgtgtggcaattgcgagagctatagtgaagaatccaaaaatactattac |
51202721 |
T |
|
| Q |
118 |
tagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctca |
217 |
Q |
| |
|
||||||| || || ||||| |||||||| |||||||| || ||||| |||||||||||||| | || | |||||| |||| || || | ||||| || |
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|
| T |
51202722 |
tagatgaagcaactagtgcacttgatgctgagtctgagaaggtggtacaagatgcacttgaccgtgtaatggtggagcgaacgacaataatagtggcgca |
51202821 |
T |
|
| Q |
218 |
tagattatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatga |
295 |
Q |
| |
|
||| ||||| || || || |||||| ||| ||| ||||| ||||| ||||| ||||| | |||||||||||||||||| |
|
|
| T |
51202822 |
taggttatcgactatcaaaggtgcagatttaatagcagtagttaagaatggtgtgatagcagagaaaggaaaacatga |
51202899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 329
Target Start/End: Complemental strand, 49734216 - 49733908
Alignment:
| Q |
21 |
acaatagcaggagagcgagggattcaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaacaggccaagaatattattactag |
120 |
Q |
| |
|
||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| |
|
|
| T |
49734216 |
acaatagtaggggagagagggatacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactag |
49734117 |
T |
|
| Q |
121 |
atgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatag |
220 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49734116 |
atgaagccacaagtgcacttgatgctgagtctgaaaaagtggttcatgatgcacttgatagattgagggtggacagaaccaccattgtggtggctcatag |
49734017 |
T |
|
| Q |
221 |
attatcaacaataaagggtgcaaattcaattgcagttgttaaaaatggagtgattgaagagaaaggaaaacatgacatattgatcaacaagggtggcacc |
320 |
Q |
| |
|
| |||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||| |||||||| |||| ||| |
|
|
| T |
49734016 |
actatctaccataaagggttcaaattcaattgcagtggttaaaaatggagtgattgaagagaaaggaaagcatgaaacgttgctcaacaagagtggtacc |
49733917 |
T |
|
| Q |
321 |
tatgcttct |
329 |
Q |
| |
|
||||||||| |
|
|
| T |
49733916 |
tatgcttct |
49733908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 57 - 310
Target Start/End: Original strand, 36288992 - 36289245
Alignment:
| Q |
57 |
ggacagaagcaacgtgtggcaattgcaagagccatagttaacaggccaagaatattattactagatgaggccacaagtgcccttgatgcagagtctgaaa |
156 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| | || | |||| ||||||| |||||||||| ||||| |||||||||||||| ||||| |||| |
|
|
| T |
36288992 |
ggacagaagcagcgtgtggcaattgcaagagcaatattgaagaatccaaaaatattactactagatgaagccaccagtgcccttgatgctgagtccgaaa |
36289091 |
T |
|
| Q |
157 |
aagtggttcaagatgcacttgatagagtgagggtggacagaaccaccattgtggtggctcatagattatcaacaataaagggtgcaaattcaattgcagt |
256 |
Q |
| |
|
|||| ||||| |||||||| ||| |||| | ||| ||| ||||||| ||| | ||||| || || ||||| || || ||||||||| ||| ||||||||| |
|
|
| T |
36289092 |
aagtagttcaggatgcactggatcgagttatggttgaccgaaccacaattatagtggcacacaggttatccactattaagggtgcagatttaattgcagt |
36289191 |
T |
|
| Q |
257 |
tgttaaaaatggagtgattgaagagaaaggaaaacatgacatattgatcaacaa |
310 |
Q |
| |
|
|| || ||||| || ||| |||||||||||| ||||| | |||||||||||| |
|
|
| T |
36289192 |
ggtgaagaatggggtcattacagagaaaggaaatcatgaaacattgatcaacaa |
36289245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 42691605 - 42691545
Alignment:
| Q |
120 |
gatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaagatgcacttgata |
180 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
42691605 |
gatgaggccactagtgcccttgattcagagtcagaaaagctggttcaagaagcacttgata |
42691545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 49736890 - 49736838
Alignment:
| Q |
117 |
ctagatgaggccacaagtgcccttgatgcagagtctgaaaaagtggttcaaga |
169 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||| |||| |||||| ||||| |
|
|
| T |
49736890 |
ctagatgaagcaacaagtgcccttgacgcagagtcggaaagagtggtacaaga |
49736838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 38566521 - 38566413
Alignment:
| Q |
48 |
ctttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaacaggccaagaatattattactagatgaggccacaagtgcccttgatgcag |
147 |
Q |
| |
|
|||||||| || |||||||| || | || ||||||||||| ||| |||| | |||||||| ||| | |||||||| || |||||||| ||||||||| |
|
|
| T |
38566521 |
ctttctggtgggcagaagcagcgcattgccattgcaagagcaatacttaagaatccaagaattttacttctagatgaagctacaagtgcacttgatgcaa |
38566422 |
T |
|
| Q |
148 |
agtctgaaa |
156 |
Q |
| |
|
| ||||||| |
|
|
| T |
38566421 |
aatctgaaa |
38566413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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