View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4582_low_17 (Length: 249)
Name: NF4582_low_17
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 41 - 226
Target Start/End: Original strand, 15715708 - 15715893
Alignment:
| Q |
41 |
atcatcaaaactatgacagtaaaagtaagaatcatattggcgtagcatattttggagactcataatttgtggttctttcttgtgtaagaccaactttata |
140 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15715708 |
atcagcaaaactatgacagtaaaagtaagaattgtattggcgtagcatattttggagactcataatttgtggttctttcttgtgtaagaccaactttata |
15715807 |
T |
|
| Q |
141 |
caagatttaattttgaaatcgaacttaaataggagggtttggaatacattttccaaaatggcttgggcataaatcactccctgtac |
226 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15715808 |
caagatttaattttcaaatcgaacttaaataggagggtttggaatacattttccaaaatggcttgggcataaatcactccctgtac |
15715893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 41 - 226
Target Start/End: Original strand, 30776097 - 30776282
Alignment:
| Q |
41 |
atcatcaaaactatgacagtaaaagtaagaatcatattggcgtagcatattttggagactcataatttgtggttctttcttgtgtaagaccaactttata |
140 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30776097 |
atcagcaaaactatgacagtaaaagtaagaattgtattggcgtagcatattttggagactcataatttgtggttctttcttgtgtaagaccaactttata |
30776196 |
T |
|
| Q |
141 |
caagatttaattttgaaatcgaacttaaataggagggtttggaatacattttccaaaatggcttgggcataaatcactccctgtac |
226 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30776197 |
caagatttaattttcaaatcgaacttaaataggagggtttggaatacattttccaaaatggcttgggcataaatcactccctgtac |
30776282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 43862811 - 43862880
Alignment:
| Q |
155 |
gaaatcgaacttaaataggagggtttggaatacattttccaaaatggcttgggcataaatcactccctgta |
225 |
Q |
| |
|
|||||| ||||| | ||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||| |
|
|
| T |
43862811 |
gaaatcaaacttgattaggagggtttggaatacatttt-caaaaaggcttaggcataaatcactgcctgta |
43862880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University