View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4582_low_5 (Length: 417)
Name: NF4582_low_5
Description: NF4582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4582_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 397
Target Start/End: Original strand, 22673278 - 22673683
Alignment:
| Q |
12 |
tcaagcttaagataagttgattaagcaagaaatcaagatcaagaacctcaagatcaacaacataaatatcaaatttggtctcatcaatcctctatatgat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22673278 |
tcaagcttaagataagttgattaagcaagaaatcaagatcaagaacctcaagatcaacaacataaatatcaaatttggtctcatcaatcctctatatgat |
22673377 |
T |
|
| Q |
112 |
attcaatgagagaaatcaagaaatcatttatactttactaaagatcaaattttaaaacacgcaacgcttatcatctgaaagatcttctgaagtagcataa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22673378 |
attcaatgagagaaatcaagaaatcatttatactttactaaagatcaaattttaaaacacgcaacgcttatcatccgaaagatcttctgaagtagcataa |
22673477 |
T |
|
| Q |
212 |
tgtgaatctgtagaatgatattcatcat---------------------aaatgaagataatggtaaagagtacaacgttgtacatcttatccaacaact |
290 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22673478 |
tgtgaatctgtagaatgatattcatcataaattattgatcatgtcaaacaaatgaagataatggtaaagagtacaacgttgtacatcttatccaacaact |
22673577 |
T |
|
| Q |
291 |
ctttttgtaactgattttatattattatgcaacgtttcttttctcatcaatggtagtattctcttcggtataacatagaaattattcaagacatgggaaa |
390 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |
|
|
| T |
22673578 |
ctttttgtaacagattttatattgttatgcaacgtttcttttctcatcaatggtagtattctcttcggtatcacagagaaattattcaagacat-ggaaa |
22673676 |
T |
|
| Q |
391 |
ttgtctt |
397 |
Q |
| |
|
||||||| |
|
|
| T |
22673677 |
ttgtctt |
22673683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University